Browse Element(s) Details


OsAffx.19438.2.S1_x_at

Description tigr:9633.m03867
TID=OsAffx.19438.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4130011/11hypothetical protein
LOC_Os12g010203/11hypothetical protein
LOC_Os11g010303/11expressed protein
LOC_Os01g122401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41250OsAffx.27273.1.S1_x_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41250OsAffx.27273.1.S1_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41259NANA5+24090501..24091191NA
LOC_Os05g41270OsAffx.15056.1.S1_s_at11/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41270OsAffx.15056.1.S1_at10/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41280OsAffx.15057.1.S1_at11/115+24097147..24098979Transcription factor HBP-1b, putative, expressed
LOC_Os05g41290Os.54368.2.S1_at11/115+24101239..24104701NB-ARC domain containing protein, expressed
LOC_Os05g41300OsAffx.19438.2.S1_x_at11/115+24107212..24109583hypothetical protein
LOC_Os05g41310Os.15501.1.S1_at8/115+24114006..24117335NB-ARC domain containing protein, expressed
LOC_Os05g41320NANA5+24125452..24125910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.1.S1_x_at11/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.3.S1_x_at5/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.2.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.5.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19438.2.S1_x_at--498--5813Chr05:24107326..24107350 (25 bp)
GACGCCACGGACAAGAGGCTCGCCT
LOC_Os05g41300
OsAffx.19438.2.S1_x_at--316--3953Chr05:24107333..24107357 (25 bp)
CGGACAAGAGGCTCGCCTACTTGGA
LOC_Os05g41300
OsAffx.19438.2.S1_x_at--59--4313Chr05:24107348..24107372 (25 bp)
CCTACTTGGAGGTGGCGGCAGAGAG
LOC_Os05g41300
OsAffx.19438.2.S1_x_at--1110--3411Chr05:24107366..24107390 (25 bp)
CAGAGAGGGTCATGCTGCTGGCCCA
LOC_Os05g41300
OsAffx.19438.2.S1_x_at--621--1351Chr05:24107367..24107391 (25 bp)
AGAGAGGGTCATGCTGCTGGCCCAC
LOC_Os05g41300
OsAffx.19438.2.S1_x_at--51--3451Chr05:24107398..24107422 (25 bp)
CAGTTGCACTTCTCGAGCGGCGATG
LOC_Os05g41300
OsAffx.19438.2.S1_x_at--12--1251Chr05:24107399..24107423 (25 bp)
AGTTGCACTTCTCGAGCGGCGATGC
LOC_Os05g41300
OsAffx.19438.2.S1_x_at--1159--6651Chr05:24107400..24107424 (25 bp)
GTTGCACTTCTCGAGCGGCGATGCA
LOC_Os05g41300
OsAffx.19438.2.S1_x_at--526--9031Chr05:24107402..24107425 (24 bp)
TGCACTTCTCGAGCGGCGATGCAGC
LOC_Os05g41300
OsAffx.19438.2.S1_x_at--174--5891Chr05:24107412..24107887 (25 bp)
GAGCGGCGATGCAGCTGGCTCCTTT
LOC_Os05g41300
OsAffx.19438.2.S1_x_at--638--10292Chr05:24107885..24107909 (25 bp)
TTTCCTCTTCCTCTTATGCTTGGAT
LOC_Os05g41300
Target Sequence 
GACGCCACGGACAAGAGGCTCGCCTACTTGGAGGTGGCGGCAGAGAGGGTCATGCTGCTGGCCCACGCCTTCCAGTTGCA
CTTCTCGAGCGGCGATGCAGCTGGCTCCTTTCCTCTTCCTCTTATGCTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19438.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis