Browse Element(s) Details


Os.54368.2.S1_at

Description gb:AF456243.1
DB_XREF= gi:22652523
TID=Os.54368.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.54368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) NBS-LRR-like protein (YR1) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) NBS-LRR-like protein (YR1) mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4129011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41250OsAffx.27273.1.S1_x_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41250OsAffx.27273.1.S1_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41259NANA5+24090501..24091191NA
LOC_Os05g41270OsAffx.15056.1.S1_s_at11/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41270OsAffx.15056.1.S1_at10/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41280OsAffx.15057.1.S1_at11/115+24097147..24098979Transcription factor HBP-1b, putative, expressed
LOC_Os05g41290Os.54368.2.S1_at11/115+24101239..24104701NB-ARC domain containing protein, expressed
LOC_Os05g41300OsAffx.19438.2.S1_x_at11/115+24107212..24109583hypothetical protein
LOC_Os05g41310Os.15501.1.S1_at8/115+24114006..24117335NB-ARC domain containing protein, expressed
LOC_Os05g41320NANA5+24125452..24125910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.1.S1_x_at11/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.3.S1_x_at5/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.2.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.5.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54368.2.S1_at--329--611Chr05:24101882..24101906 (25 bp)
ATGCTGTTGACTCCGAACAACTCCA
LOC_Os05g41290
Os.54368.2.S1_at--997--2631Chr05:24101906..24101930 (25 bp)
AACCATGCCAACGTTTCTGTTCTTC
LOC_Os05g41290
Os.54368.2.S1_at--808--951Chr05:24102003..24102027 (25 bp)
AGTACTTCCAGTTACGGGTGTGGCT
LOC_Os05g41290
Os.54368.2.S1_at--958--7471Chr05:24102020..24102044 (25 bp)
GTGTGGCTGTGCGTTTCTGAAAATT
LOC_Os05g41290
Os.54368.2.S1_at--1069--5531Chr05:24102068..24102092 (25 bp)
GAAACCATTGAATCAGTTGCCAGTG
LOC_Os05g41290
Os.54368.2.S1_at--827--4411Chr05:24102086..24102110 (25 bp)
GCCAGTGGGTTCTCATCGGTCACGA
LOC_Os05g41290
Os.54368.2.S1_at--215--7831Chr05:24102103..24102127 (25 bp)
GGTCACGACCAACATGAACTTGCTT
LOC_Os05g41290
Os.54368.2.S1_at--194--811Chr05:24102208..24102232 (25 bp)
ATGGGACAGATATCGTTGTGCTCTT
LOC_Os05g41290
Os.54368.2.S1_at--462--7691Chr05:24102298..24102322 (25 bp)
GGGTGGAATGACTCCTTACTTTCTA
LOC_Os05g41290
Os.54368.2.S1_at--1103--8151Chr05:24102348..24102372 (25 bp)
GGAACTTGTTCAGGAGCTATGCATT
LOC_Os05g41290
Os.54368.2.S1_at--715--9111Chr05:24102373..24102397 (25 bp)
TGCTGATGGTGACTCCAGTTTGCAC
LOC_Os05g41290
Target Sequence 
ATGCTGTTGACTCCGAACAACTCCAACCATGCCAACGTTTCTGTTCTTCCCATAGTGGGTATGGGGGGACTAGGGAAGAC
AACTCTAACACAGCTTGTCTACAATGATCCAAGAGTAAAGGAGTACTTCCAGTTACGGGTGTGGCTGTGCGTTTCTGAAA
ATTTTGACGAAATGAAGCTTACCAAGGAAACCATTGAATCAGTTGCCAGTGGGTTCTCATCGGTCACGACCAACATGAAC
TTGCTTCAAGAAGATCTCTCAAAAAAGCTGGAAGGTAAAAGATTTCTTCTAGTACTTGATGATGTTTGGAATGAGGACCC
TGAAAAATGGGACAGATATCGTTGTGCTCTTGTTAGTGGAAGCAATGGAAGCAGAATTGTAGTAACTACACGGAACAAAA
ATGTTGGGAAACTAATGGGTGGAATGACTCCTTACTTTCTAAAGCAGTTATCTGAAAATGATTGCTGGAACTTGTTCAGG
AGCTATGCATTTGCTGATGGTGACTCCAGTTTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54368.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis