Browse Element(s) Details


Os.15501.1.S1_at

Description gb:AF456247.1
DB_XREF= gi:22652531
GEN=YR48
TID=Os.15501.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15501 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) NBS-LRR-like protein (YR48) mRNA, complete cds.
PROD=NBS-LRR-like protein
FL= gb:AF456247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g413108/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41259NANA5+24090501..24091191NA
LOC_Os05g41270OsAffx.15056.1.S1_s_at11/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41270OsAffx.15056.1.S1_at10/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41280OsAffx.15057.1.S1_at11/115+24097147..24098979Transcription factor HBP-1b, putative, expressed
LOC_Os05g41290Os.54368.2.S1_at11/115+24101239..24104701NB-ARC domain containing protein, expressed
LOC_Os05g41300OsAffx.19438.2.S1_x_at11/115+24107212..24109583hypothetical protein
LOC_Os05g41310Os.15501.1.S1_at8/115+24114006..24117335NB-ARC domain containing protein, expressed
LOC_Os05g41320NANA5+24125452..24125910retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.1.S1_x_at11/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.3.S1_x_at5/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.2.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41330OsAffx.22947.5.S1_x_at3/115+24128023..24134386retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41340Os.25048.1.S1_at1/115+24137443..24138656retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g41350NANA5+24140664..24142825retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15501.1.S1_at--761--611Chr05:24116921..24116945 (25 bp)
ATGCTCCAACATAATCAATCCTCTT
LOC_Os05g41310
Os.15501.1.S1_at--261--5911Chr05:24116961..24116985 (25 bp)
GAGCTCTTTGCTCTCAAGAATCTTG
LOC_Os05g41310
Os.15501.1.S1_at--909--9571Chr05:24116986..24117010 (25 bp)
TCATTGCGGATTGCGTTAGCCTTAA
LOC_Os05g41310
Os.15501.1.S1_at--270--4631Chr05:24116998..24117022 (25 bp)
GCGTTAGCCTTAATACTTTTCCAGA
LOC_Os05g41310
Os.15501.1.S1_at--913--3131Chr05:24117060..24117084 (25 bp)
AATTGCAGTAATCTGGCCTCCTTGC
LOC_Os05g41310
Os.15501.1.S1_at--785--3811Chr05:24117077..24117101 (25 bp)
CTCCTTGCCTGCTTGTTTACAAGAA
LOC_Os05g41310
Os.15501.1.S1_at--1081--831Chr05:24117163..24117187 (25 bp)
ATGGACTTCCACTGTCCTTAGAAGA
LOC_Os05g41310
Os.15501.1.S1_at--473--2791Chr05:24117199..24117223 (25 bp)
AAGAGTGCCCATTTCTGGCAGAGAG
LOC_Os05g41310
Os.15501.1.S1_at--1024--3151Chr05:24117372..24117396 (25 bp)
AATTGCCTTCTCTAGTTTCTTTTGT
NONE
Os.15501.1.S1_at--405--8351Chr05:24117414..24117438 (25 bp)
GGCTGGCTGTGAACATCATACTCAA
NONE
Os.15501.1.S1_at--452--9591Chr05:24117429..24117453 (25 bp)
TCATACTCAAACCTATTCTCTGCAG
NONE
Target Sequence 
ATGCTCCAACATAATCAATCCTCTTCTTGATGAACTTAATGAGCTCTTTGCTCTCAAGAATCTTGTCATTGCGGATTGCG
TTAGCCTTAATACTTTTCCAGAAAAGTTACCGGCTACCCTCAAAAAATTGGAGATCTTCAATTGCAGTAATCTGGCCTCC
TTGCCTGCTTGTTTACAAGAAGCCTCTTGTCTAAAAACTATGACTATCTTAAATTGTGTTAGCATAAAATGCTTGCCAGC
ACATGGACTTCCACTGTCCTTAGAAGAATTATACATCAAAGAGTGCCCATTTCTGGCAGAGAGGTGTCAAGAAAACAGTG
GAGAAGATTGGCCTAAAATATCTCATATAGCCATCATAGAGATTGACGATGATAGTGCCATGCCAGATAGGAGCATAAGG
AGAAGATTATGCTAAAAGCTTCTTAGCAACTCAACAAAAAGGGTATGAATTAATTGCCTTCTCTAGTTTCTTTTGTCTAA
ATATAATAGATAAGGCTGGCTGTGAACATCATACTCAAACCTATTCTCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis