Browse Element(s) Details


OsAffx.15057.1.S1_at

Description tigr:9633.m03865
TID=OsAffx.15057.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=bZIP transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4128011/11Transcription factor HBP-1b, putative, expressed
LOC_Os01g388801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41240Os.13978.1.S1_a_at11/115+24070525..24074848MYB transcription factor, putative, expressed
LOC_Os05g41250OsAffx.27273.1.S1_x_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41250OsAffx.27273.1.S1_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41259NANA5+24090501..24091191NA
LOC_Os05g41270OsAffx.15056.1.S1_s_at11/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41270OsAffx.15056.1.S1_at10/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41280OsAffx.15057.1.S1_at11/115+24097147..24098979Transcription factor HBP-1b, putative, expressed
LOC_Os05g41290Os.54368.2.S1_at11/115+24101239..24104701NB-ARC domain containing protein, expressed
LOC_Os05g41300OsAffx.19438.2.S1_x_at11/115+24107212..24109583hypothetical protein
LOC_Os05g41310Os.15501.1.S1_at8/115+24114006..24117335NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009627biological_processsystemic acquired resistance
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15057.1.S1_at--1075--8911Chr05:24098169..24098193 (25 bp)
TGAGCTGAGGTCTGCAGTCCACACT
LOC_Os05g41280
OsAffx.15057.1.S1_at--236--6791Chr05:24098224..24098248 (25 bp)
GTTAGTAGCGTCATGGCGCACCATG
LOC_Os05g41280
OsAffx.15057.1.S1_at--230--2311Chr05:24098280..24098304 (25 bp)
AAAGGCTGATGCTCTCCATGTGTTA
LOC_Os05g41280
OsAffx.15057.1.S1_at--256--7871Chr05:24098345..24098369 (25 bp)
GGTTAGGTGGATTCCGACCATCGGA
LOC_Os05g41280
OsAffx.15057.1.S1_at--448--5851Chr05:24098360..24098487 (25 bp)
GACCATCGGATCTTCTTAAGTTGCT
LOC_Os05g41280
OsAffx.15057.1.S1_at--492--6671Chr05:24098491..24098515 (25 bp)
GTTGCTTGCAGATCAGCTAGAGCCA
LOC_Os05g41280
OsAffx.15057.1.S1_at--470--8911Chr05:24098521..24098545 (25 bp)
TGAGCAGCAGCTTGCCAGCATATAC
LOC_Os05g41280
OsAffx.15057.1.S1_at--729--1511Chr05:24098550..24098574 (25 bp)
AGCAGCAATCTTCCCAACAGGCAGA
LOC_Os05g41280
OsAffx.15057.1.S1_at--804--1272Chr05:24098677..24098701 (25 bp)
AGATCACACGGCTGCGGCATTGGGA
LOC_Os05g41280
OsAffx.15057.1.S1_at--375--491Chr05:24098705..24098729 (25 bp)
ATCGGCGACATGGAAAGCTTGCTGC
LOC_Os05g41280
OsAffx.15057.1.S1_at--774--2871Chr05:24098898..24098922 (25 bp)
AAGGGCGCTGCTCTTAGTCAGTGAC
LOC_Os05g41280
Target Sequence 
TGAGCTGAGGTCTGCAGTCCACACTCATGCCGGTGACGATGATCTTCAGAACATTGTTAGTAGCGTCATGGCGCACCATG
AAGAAATCTTCAGGATCAAGGGTTTAGCAGCAAAGGCTGATGCTCTCCATGTGTTATCAGCAACCTGGAGGACCCCTCTT
GAGAGGTGTTTTCTTTGGTTAGGTGGATTCCGACCATCGGATCTTCTTAAGTTGCTTGCAGATCAGCTAGAGCCACTGAC
TGAGCAGCAGCTTGCCAGCATATACAACCAGCAGCAATCTTCCCAACAGGCAGAAGAAACTCTTTCTCAAGGGATGGAAA
TTATACAAGATTCTCTTGCGAAAACCGTTGCATCCCAACTTGGCCGTGCAGGTTCTTCTTCTCCTAGCAATGCTGCAGAT
CACACGGCTGCGGCATTGGGAAAGATCGGCGACATGGAAAGCTTGCTGCAGCAGGCTGATGATCTGCGGATGCAAAGTCT
CCAGAAAATGCAGCGGGTGCTGACCACCCGGCAATCTGCAAGGGCGCTGCTCTTAGTCAGTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis