Browse Element(s) Details


OsAffx.27273.1.S1_at

Description tigr:9633.m03862
TID=OsAffx.27273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4125011/11VQ motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g41230Os.47896.1.A1_at11/115+24066128..24068334BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os05g41240Os.13978.1.S1_a_at11/115+24070525..24074848MYB transcription factor, putative, expressed
LOC_Os05g41250OsAffx.27273.1.S1_x_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41250OsAffx.27273.1.S1_at11/115+24088126..24088692VQ motif family protein
LOC_Os05g41259NANA5+24090501..24091191NA
LOC_Os05g41270OsAffx.15056.1.S1_s_at11/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41270OsAffx.15056.1.S1_at10/115+24092281..24094983Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os05g41280OsAffx.15057.1.S1_at11/115+24097147..24098979Transcription factor HBP-1b, putative, expressed
LOC_Os05g41290Os.54368.2.S1_at11/115+24101239..24104701NB-ARC domain containing protein, expressed
LOC_Os05g41300OsAffx.19438.2.S1_x_at11/115+24107212..24109583hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27273.1.S1_at--53--532Chr02:566275..566367 (25 bp)
ATCGCCAACCCGATGCGGGTGACCA
NONE
OsAffx.27273.1.S1_at--432--1811Chr05:24088505..24088529 (25 bp)
ACCCGATGCGGGTGACCACCAGCGA
LOC_Os05g41250
OsAffx.27273.1.S1_at--960--4151Chr05:24088205..24088229 (25 bp)
CGCCGGAGCTGATCGACAACAGGTA
LOC_Os05g41250
OsAffx.27273.1.S1_at--740--4251Chr05:24088203..24088227 (25 bp)
CCGGAGCTGATCGACAACAGGTACT
LOC_Os05g41250
OsAffx.27273.1.S1_at--959--5891Chr05:24088200..24088224 (25 bp)
GAGCTGATCGACAACAGGTACTCCG
LOC_Os05g41250
OsAffx.27273.1.S1_at--101--4711Chr05:24088198..24088222 (25 bp)
GCTGATCGACAACAGGTACTCCGTC
LOC_Os05g41250
OsAffx.27273.1.S1_at--381--8851Chr05:24088196..24088220 (25 bp)
TGATCGACAACAGGTACTCCGTCTG
LOC_Os05g41250
OsAffx.27273.1.S1_at--387--6391Chr05:24088195..24088219 (25 bp)
GATCGACAACAGGTACTCCGTCTGC
LOC_Os05g41250
OsAffx.27273.1.S1_at--687--9351Chr05:24088193..24088217 (25 bp)
TCGACAACAGGTACTCCGTCTGCTT
LOC_Os05g41250
OsAffx.27273.1.S1_at--511--5611Chr05:24088191..24088215 (25 bp)
GACAACAGGTACTCCGTCTGCTTCT
LOC_Os05g41250
OsAffx.27273.1.S1_at--265--2211Chr05:24088190..24088214 (25 bp)
ACAACAGGTACTCCGTCTGCTTCTC
LOC_Os05g41250
Target Sequence 
ATCGCCAACCCGATGCGGGTGACCACCAGCGAGGAGGGCTTCCGCGCGCTCGTGCAGGAGCTCACCGGCCGGCACGCCGA
CCCGTCCAAGTACCGCGGCGGCGGCGGCGGCGCGCCCGTCGACGAGACCAGCGGCGGTGGTGGCGGCGGCGGCGGCGAGA
TGATGCAGGGCGCGGCGGCGATGATGCAGCCCAGCCCGGGCAGCACCGTGGACTCGTCGTCGACGGACCACGGCGGCGCC
GGCGCCGGCGGGCAGGGCGCCGGCCTGCAGGCGGCGGCGCTGGACGACGACGAGAACAGCTTCATCGCGCCGGAGCTGAT
CGACAACAGGTACTCCGTCTGCTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis