Browse Element(s) Details


Os.25048.1.S1_at

Description gb:AK101479.1
DB_XREF= gi:32986688
TID=Os.25048.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.25048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative calmodulin binding protein similar to ER66 (OSJNBa0091J06.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041A20, full insert sequence.
FL= gb:AK105116.1 gb:AK101479.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g229508/11anther ethylene-upregulated protein ER1, putative, expressed
LOC_Os07g152101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g413401/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22930OsAffx.18424.1.S1_at11/1110+11583286..11587976Leucine Rich Repeat family protein
LOC_Os10g22940OsAffx.8198.2.S1_at10/1110+11600245..11602673hypothetical protein
LOC_Os10g22940OsAffx.8198.1.S1_at9/1110+11600245..11602673hypothetical protein
LOC_Os10g22940Os.45902.1.A1_x_at4/1110+11600245..11602673hypothetical protein
LOC_Os10g22940OsAffx.10222.1.S1_x_at2/1110+11600245..11602673hypothetical protein
LOC_Os10g22950Os.25048.1.S1_at8/1110+11604242..11611524anther ethylene-upregulated protein ER1, putative, expressed
LOC_Os10g22960Os.46524.1.S1_at11/1110+11616411..11619646hydrolase, putative, expressed
LOC_Os10g22960Os.46524.1.S1_x_at11/1110+11616411..11619646hydrolase, putative, expressed
LOC_Os10g22960Os.46524.2.S1_x_at6/1110+11616411..11619646hydrolase, putative, expressed
LOC_Os10g22970OsAffx.218.1.A1_at5/1110+11630557..11630793hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005516molecular_functioncalmodulin binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25048.1.S1_at--765--4353Chr10:11610933..11610957 (25 bp)
CCAGAAGCAAGGGATCAGTACCAAA
LOC_Os10g22950
Os.25048.1.S1_at--796--8771Chr10:11610971..11610995 (25 bp)
TGTTTCGAAAATGCAAGAGTCTCAG
LOC_Os10g22950
Os.25048.1.S1_at--483--2771Chr10:11610985..11611125 (25 bp)
AAGAGTCTCAGACCGTGCAAGAAAA
LOC_Os10g22950
Os.25048.1.S1_at--824--10331Chr10:11611129..11611153 (25 bp)
TTTAGACGAATCAACCGAGATGGAT
LOC_Os10g22950
Os.25048.1.S1_at--350--8071Chr10:11611180..11611204 (25 bp)
GGAGCTGTGGGATGATGATACACCA
LOC_Os10g22950
Os.25048.1.S1_at--793--6291Chr10:11611193..11611217 (25 bp)
GATGATACACCACTCCCTGGTTATT
LOC_Os10g22950
Os.25048.1.S1_at--1111--9091Chr10:11611272..11611296 (25 bp)
TGCTGAATTGACACCTGCCGATAAC
LOC_Os10g22950
Os.25048.1.S1_at--746--7931Chr10:11611354..11611378 (25 bp)
GGATTCAGTTGTGGTATTCTTGCTT
LOC_Os10g22950
Os.25048.1.S1_at--373--8791NONE
TGTTGGTAATTGATCCCCTTGGGAG
NONE
Os.25048.1.S1_at--338--551NONE
ATCCCCTTGGGAGTGATGGTGCTTA
NONE
Os.25048.1.S1_at--693--6251NONE
GATGGTGCTTAATGGTACGGTACAT
NONE
Target Sequence 
CCAGAAGCAAGGGATCAGTACCAAAGGATTTTGAATGTTGTTTCGAAAATGCAAGAGTCTCAGACCGTGCAAGAAAAGAT
TTTAGACGAATCAACCGAGATGGATGAAGGTGATTTCATGAGTGAATTCAAGGAGCTGTGGGATGATGATACACCACTCC
CTGGTTATTTNTAGTGTTCTAGACTAACTGGTGGTGTCTCTGTAAATCTCTTCTCTTCAGTTNTGCTGAATTGACACCTG
CCGATAACCCAAACTCTCAACATAGCATGAATAGCATGATCTTAAAATCTTGAATGCTTGGATTTGGATTCAGTTGTGGT
ATTCTTGCTTTTATGTTATAGCGTTATGTACAGTAGAATCTTATTTTATCATTGAAGGAGCCATGTATATGCAGTATGAA
ACTAATGCAGAAAGTTGGTGGTTGTATCNTTTGAATTCAAAGNTGCATGTGTGNTANNCAATTTNTTGCATTAGNGAAAT
TCGAAGTAGTGTGGTAACTTTTATTGAAAGGATCCATGTTGGTAATTGATCCCCTTGGGAGTGATGGTGCTTAATGGTAC
GGTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis