Browse Element(s) Details


OsAffx.18424.1.S1_at

Description gb:NM_196148.1
DB_XREF= gi:37533655
TID=OsAffx.18424.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putativedisease resistance protein (OSJNBa0091J06.17), mRNA.
PROD=putativedisease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2293011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22890OsAffx.8200.1.S1_at11/1110+11565120..11568331Leucine Rich Repeat family protein
LOC_Os10g22900OsAffx.30509.1.S1_at11/1110+11568857..11570381hypothetical protein
LOC_Os10g22910OsAffx.30510.1.S1_at11/1110+11572843..11573073hypothetical protein
LOC_Os10g22920OsAffx.18353.1.S1_at11/1110+11576485..11578482Cf2/Cf5 disease resistance protein homolog, putative
LOC_Os10g22930OsAffx.18424.1.S1_at11/1110+11583286..11587976Leucine Rich Repeat family protein
LOC_Os10g22940OsAffx.8198.2.S1_at10/1110+11600245..11602673hypothetical protein
LOC_Os10g22940OsAffx.8198.1.S1_at9/1110+11600245..11602673hypothetical protein
LOC_Os10g22940Os.45902.1.A1_x_at4/1110+11600245..11602673hypothetical protein
LOC_Os10g22940OsAffx.10222.1.S1_x_at2/1110+11600245..11602673hypothetical protein
LOC_Os10g22950Os.25048.1.S1_at8/1110+11604242..11611524anther ethylene-upregulated protein ER1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18424.1.S1_at--654--7831Chr10:11587391..11587415 (25 bp)
GGTAACCATTGATTTATCCTCCAAC
LOC_Os10g22930
OsAffx.18424.1.S1_at--573--1251Chr10:11587441..11587465 (25 bp)
AGATAACCTCTCTCCTTAGTTTAAG
LOC_Os10g22930
OsAffx.18424.1.S1_at--13--9551Chr10:11587564..11587588 (25 bp)
TTTCCGGTGAAATCCCATCGAGCCT
LOC_Os10g22930
OsAffx.18424.1.S1_at--831--511Chr10:11587580..11587604 (25 bp)
ATCGAGCCTCTCAAATCTAACATTT
LOC_Os10g22930
OsAffx.18424.1.S1_at--929--7951Chr10:11587656..11587680 (25 bp)
GGATCACAACTTGACAGCCTCTATA
LOC_Os10g22930
OsAffx.18424.1.S1_at--592--1491Chr10:11587684..11587708 (25 bp)
AGCACCCTCGTATGTTCGATGGCAA
LOC_Os10g22930
OsAffx.18424.1.S1_at--1113--10591Chr10:11587718..11587742 (25 bp)
TTGCGGGCCACCTCTTGGAAAGAAT
LOC_Os10g22930
OsAffx.18424.1.S1_at--545--10331Chr10:11587817..11587841 (25 bp)
TTTACTGGGCTTCATTGCAGGTCTC
LOC_Os10g22930
OsAffx.18424.1.S1_at--925--3891Chr10:11587841..11587865 (25 bp)
CTGGGTGGTTTTCTGCATCATGCTC
LOC_Os10g22930
OsAffx.18424.1.S1_at--1071--831Chr10:11587877..11587901 (25 bp)
ATGGAGAATTGCCTACTTCCGCCTG
LOC_Os10g22930
OsAffx.18424.1.S1_at--102--3651Chr10:11587892..11587916 (25 bp)
CTTCCGCCTGTTCGATAGTATGTAT
LOC_Os10g22930
Target Sequence 
GGTAACCATTGATTTATCCTCCAACTATTTGACTGGAGACATTCCACAAGAGATAACCTCTCTCCTTAGTTTAAGATGCT
TGAATTTGTCTGGGAATCACTTGAGTGGAAAAATTCCAAACAAGATTGGGATCCTGCAGTCATTGGAATCACTTGATTTG
TCAAGAAACAACCTTTCCGGTGAAATCCCATCGAGCCTCTCAAATCTAACATTTTTAAGTGACCTGGACTTGTCATTTAA
CAATCTTAGAGGAACAATACCATCAGGATCACAACTTGACAGCCTCTATACGGAGCACCCTCGTATGTTCGATGGCAACG
GCGGTCTTTGCGGGCCACCTCTTGGAAAGAATTGCTATGTACCGCAGAAAGGTCACATGAGAAGAAAAGAAAATTTTTCT
AAGATACAGCCATTTCATGTTGGAATTTTACTGGGCTTCATTGCAGGTCTCTGGGTGGTTTTCTGCATCATGCTCTTCAA
AAAATCATGGAGAATTGCCTACTTCCGCCTGTTCGATAGTATGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18424.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis