Browse Element(s) Details


OsAffx.18353.1.S1_at

Description tigr:9638.m01943
TID=OsAffx.18353.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2292011/11Cf2/Cf5 disease resistance protein homolog, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22860Os.35432.2.S1_at11/1110+11548749..11552028Leucine Rich Repeat family protein, expressed
LOC_Os10g22880NANA10+11556207..11557209hypothetical protein
LOC_Os10g22890OsAffx.8200.1.S1_at11/1110+11565120..11568331Leucine Rich Repeat family protein
LOC_Os10g22900OsAffx.30509.1.S1_at11/1110+11568857..11570381hypothetical protein
LOC_Os10g22910OsAffx.30510.1.S1_at11/1110+11572843..11573073hypothetical protein
LOC_Os10g22920OsAffx.18353.1.S1_at11/1110+11576485..11578482Cf2/Cf5 disease resistance protein homolog, putative
LOC_Os10g22930OsAffx.18424.1.S1_at11/1110+11583286..11587976Leucine Rich Repeat family protein
LOC_Os10g22940OsAffx.8198.2.S1_at10/1110+11600245..11602673hypothetical protein
LOC_Os10g22940OsAffx.8198.1.S1_at9/1110+11600245..11602673hypothetical protein
LOC_Os10g22940Os.45902.1.A1_x_at4/1110+11600245..11602673hypothetical protein
LOC_Os10g22940OsAffx.10222.1.S1_x_at2/1110+11600245..11602673hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0050832biological_processdefense response to fungi
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18353.1.S1_at--976--6211Chr10:11576719..11576743 (25 bp)
GAGGCCGCTGCAGACTGCTGCCAGT
LOC_Os10g22920
OsAffx.18353.1.S1_at--296--9331Chr10:11576795..11576819 (25 bp)
TCGCCAATCGCGAGTTCGATGGTAG
LOC_Os10g22920
OsAffx.18353.1.S1_at--1088--9351Chr10:11576831..11576855 (25 bp)
TCGATGACCAGGTGTCTCTTGTTGG
LOC_Os10g22920
OsAffx.18353.1.S1_at--702--10791Chr10:11576849..11576873 (25 bp)
TTGTTGGTGACATAAGCCGCTCTTT
LOC_Os10g22920
OsAffx.18353.1.S1_at--1053--9511Chr10:11576876..11576900 (25 bp)
TCTCTCTGGAGCACCTGAGTGACCT
LOC_Os10g22920
OsAffx.18353.1.S1_at--744--8891Chr10:11576891..11576915 (25 bp)
TGAGTGACCTCCAACTCGGCTGGAA
LOC_Os10g22920
OsAffx.18353.1.S1_at--295--2551Chr10:11576903..11576927 (25 bp)
AACTCGGCTGGAATTTCCTGGAGGG
LOC_Os10g22920
OsAffx.18353.1.S1_at--42--2311Chr10:11576966..11576990 (25 bp)
AAAGGCTGGAATCTCTTGGCCTCAC
LOC_Os10g22920
OsAffx.18353.1.S1_at--273--8271Chr10:11576992..11577016 (25 bp)
GGCATACCATTTTCTGGCACCGTGC
LOC_Os10g22920
OsAffx.18353.1.S1_at--972--8631Chr10:11577812..11577836 (25 bp)
TGGGACAACTTCTCCACTCTAGAAA
LOC_Os10g22920
OsAffx.18353.1.S1_at--919--4011Chr10:11577838..11577862 (25 bp)
CGTCTTTTCTCATAAGGGCATCCAC
LOC_Os10g22920
Target Sequence 
GAGGCCGCTGCAGACTGCTGCCAGTGGGACGGTGTCGAGTGCGACAGCCGCACCGGCCGTGTCATCGGCCTCGACCTCGC
CAATCGCGAGTTCGATGGTAGGACGGGCGTGCTCGATGACCAGGTGTCTCTTGTTGGTGACATAAGCCGCTCTTTGCTCT
CTCTGGAGCACCTGAGTGACCTCCAACTCGGCTGGAATTTCCTGGAGGGGCGCACTGGTCGTCTCCCGGACTTCCTTGGC
TCTTTCAAAAGGCTGGAATCTCTTGGCCTCACCGGCATACCATTTTCTGGCACCGTGCCTCCTAAGCTCGNAATNNNNNN
NTNNTGGGACAACTTCTCCACTCTAGAAATCGTCTTTTCTCATAAGGGCATCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis