Browse Element(s) Details


OsAffx.8200.1.S1_at

Description tigr:9638.m01940
TID=OsAffx.8200.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2289011/11Leucine Rich Repeat family protein
LOC_Os12g412501/11Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22850NANA10+11545534..11545737hypothetical protein
LOC_Os10g22860Os.35432.2.S1_at11/1110+11548749..11552028Leucine Rich Repeat family protein, expressed
LOC_Os10g22880NANA10+11556207..11557209hypothetical protein
LOC_Os10g22890OsAffx.8200.1.S1_at11/1110+11565120..11568331Leucine Rich Repeat family protein
LOC_Os10g22900OsAffx.30509.1.S1_at11/1110+11568857..11570381hypothetical protein
LOC_Os10g22910OsAffx.30510.1.S1_at11/1110+11572843..11573073hypothetical protein
LOC_Os10g22920OsAffx.18353.1.S1_at11/1110+11576485..11578482Cf2/Cf5 disease resistance protein homolog, putative
LOC_Os10g22930OsAffx.18424.1.S1_at11/1110+11583286..11587976Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006552biological_processleucine catabolism
GO:0006633biological_processfatty acid biosynthesis
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009933biological_processmeristem organization
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003989molecular_functionacetyl-CoA carboxylase activity
GO:0004485molecular_functionmethylcrotonoyl-CoA carboxylase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8200.1.S1_at--1127--7771Chr10:11567688..11567712 (25 bp)
GGTGCTGCACTGGACTATTTGCACA
LOC_Os10g22890
OsAffx.8200.1.S1_at--1159--1971Chr10:11567716..11567740 (25 bp)
ACTGCCAGCCAGCAATAGTTCATTG
LOC_Os10g22890
OsAffx.8200.1.S1_at--264--10051Chr10:11567731..11567755 (25 bp)
TAGTTCATTGCGACTTAAAGCCCAG
LOC_Os10g22890
OsAffx.8200.1.S1_at--722--10711Chr10:11567674..11567956 (25 bp)
TTGCTCCAGGAATTGCTAATGTCGC
LOC_Os10g22890
OsAffx.8200.1.S1_at--1130--4831Chr10:11567946..11567970 (25 bp)
GCTAATGTCGCATATGCATTGCAGA
LOC_Os10g22890
OsAffx.8200.1.S1_at--118--10311Chr10:11567991..11568015 (25 bp)
TTTCTCCATACGGTGATGTCTACAG
LOC_Os10g22890
OsAffx.8200.1.S1_at--126--4211Chr10:11568143..11568167 (25 bp)
CCCCTTATGCTATCAGTTGAGAATG
LOC_Os10g22890
OsAffx.8200.1.S1_at--644--9712Chr12:25548308..25548330 (22 bp)
TCAACAGTGTCATTACTGCTGTCAC
LOC_Os12g41250
OsAffx.8200.1.S1_at--989--5711Chr10:11568207..11568231 (25 bp)
GACTCGCACTAGTATGCAGCAGGAG
LOC_Os10g22890
OsAffx.8200.1.S1_at--443--8011Chr10:11568231..11568255 (25 bp)
GGAGGCCAACTGATAGGTTATGCAT
LOC_Os10g22890
OsAffx.8200.1.S1_at--230--6451Chr10:11568274..11568298 (25 bp)
GATACAGACAATTAGGGCTTCCTAT
LOC_Os10g22890
Target Sequence 
GGTGCTGCACTGGACTATTTGCACAACAACTGCCAGCCAGCAATAGTTCATTGCGACTTAAAGCCCAGCAACATTCTTCT
TGGGGATGGCATGGTTGCTCATGTTGGGGATTTTGGCCTTGCAAAGATTCTTACAGATCCAGAAGGTGAACAACTGATCA
ATTCAAAGAGTTCTGTGGGGATAATGGGTACAATTGGATATGTTGCTCCAGGAATTGCTAATGTCGCATATGCATTGCAG
AATATGGAGAAGGTGGTCAAATTTCTCCATACGGTGATGTCTACAGCTTTGGTATATTGCTCCTTGAGATGTTTACAGAA
ATATGCGGAAATGGCATATCCAGAACTACTGATAGATATTGTTGACCCCCTTATGCTATCAGTTGAGAATGCATCGGGAG
AAATCAACAGTGTCATTACTGCTGTCACAAGACTCGCACTAGTATGCAGCAGGAGGAGGCCAACTGATAGGTTATGCATG
AGAGAAGTTGTAGCTGAGATACAGACAATTAGGGCTTCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis