Browse Element(s) Details


OsAffx.30509.1.S1_at

Description tigr:9638.m01941
TID=OsAffx.30509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2290011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22850NANA10+11545534..11545737hypothetical protein
LOC_Os10g22860Os.35432.2.S1_at11/1110+11548749..11552028Leucine Rich Repeat family protein, expressed
LOC_Os10g22880NANA10+11556207..11557209hypothetical protein
LOC_Os10g22890OsAffx.8200.1.S1_at11/1110+11565120..11568331Leucine Rich Repeat family protein
LOC_Os10g22900OsAffx.30509.1.S1_at11/1110+11568857..11570381hypothetical protein
LOC_Os10g22910OsAffx.30510.1.S1_at11/1110+11572843..11573073hypothetical protein
LOC_Os10g22920OsAffx.18353.1.S1_at11/1110+11576485..11578482Cf2/Cf5 disease resistance protein homolog, putative
LOC_Os10g22930OsAffx.18424.1.S1_at11/1110+11583286..11587976Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30509.1.S1_at--721--7191Chr10:11569927..11569951 (25 bp)
GTCGGATCCATTACAGCGAGCGGGC
LOC_Os10g22900
OsAffx.30509.1.S1_at--91--9451Chr10:11569926..11569950 (25 bp)
TCGGATCCATTACAGCGAGCGGGCC
LOC_Os10g22900
OsAffx.30509.1.S1_at--1086--551Chr10:11569925..11569946 (22 bp)
ATCCATTACAGCGAGCGGGCCGGCA
LOC_Os10g22900
OsAffx.30509.1.S1_at--705--9232Chr10:11569925..11569945 (21 bp)
TCCATTACAGCGAGCGGGCCGGCAC
LOC_Os10g22900
OsAffx.30509.1.S1_at--1079--4511Chr10:11569814..11569838 (25 bp)
GCCGCTACAGACCAGGTCGGAAGCT
LOC_Os10g22900
OsAffx.30509.1.S1_at--189--9871Chr10:11569809..11569833 (25 bp)
TACAGACCAGGTCGGAAGCTTCTTC
LOC_Os10g22900
OsAffx.30509.1.S1_at--374--3411Chr10:11569807..11569831 (25 bp)
CAGACCAGGTCGGAAGCTTCTTCTC
LOC_Os10g22900
OsAffx.30509.1.S1_at--781--1371Chr10:11569806..11569830 (25 bp)
AGACCAGGTCGGAAGCTTCTTCTCC
LOC_Os10g22900
OsAffx.30509.1.S1_at--60--1732Chr10:11569804..11569828 (25 bp)
ACCAGGTCGGAAGCTTCTTCTCCGA
LOC_Os10g22900
OsAffx.30509.1.S1_at--287--3291Chr10:11569307..11569331 (25 bp)
CAAAGGTAGCAATATACTTTCTCCG
LOC_Os10g22900
OsAffx.30509.1.S1_at--455--9291Chr10:11568891..11569310 (25 bp)
TCCGTTTCACAATAAAGATAGAGTT
LOC_Os10g22900
Target Sequence 
GTCGGATCCATTACAGCGAGCGGGCCGGCACCGGAACTCCGGCGACGGCGAGCTACTCCGCCGCTACAGACCAGGTCGGA
AGCTTCTTCTCCGACGAGATTGCAAAGGTAGCAATATACTTTCTCCGTTTCACAATAAAGATAGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis