Browse Element(s) Details


OsAffx.8198.2.S1_at

Description tigr:9638.m01945
TID=OsAffx.8198.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2294010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22920OsAffx.18353.1.S1_at11/1110+11576485..11578482Cf2/Cf5 disease resistance protein homolog, putative
LOC_Os10g22930OsAffx.18424.1.S1_at11/1110+11583286..11587976Leucine Rich Repeat family protein
LOC_Os10g22940OsAffx.8198.2.S1_at10/1110+11600245..11602673hypothetical protein
LOC_Os10g22940OsAffx.8198.1.S1_at9/1110+11600245..11602673hypothetical protein
LOC_Os10g22940Os.45902.1.A1_x_at4/1110+11600245..11602673hypothetical protein
LOC_Os10g22940OsAffx.10222.1.S1_x_at2/1110+11600245..11602673hypothetical protein
LOC_Os10g22950Os.25048.1.S1_at8/1110+11604242..11611524anther ethylene-upregulated protein ER1, putative, expressed
LOC_Os10g22960Os.46524.1.S1_at11/1110+11616411..11619646hydrolase, putative, expressed
LOC_Os10g22960Os.46524.1.S1_x_at11/1110+11616411..11619646hydrolase, putative, expressed
LOC_Os10g22960Os.46524.2.S1_x_at6/1110+11616411..11619646hydrolase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8198.2.S1_at--139--10871Chr10:11602048..11602071 (24 bp)
TTGGATGGACAATCCTACGAAGATT
LOC_Os10g22940
OsAffx.8198.2.S1_at--1090--6712Chr11:3981376..3981478 (24 bp)
GTTCGGCGGTCTAACTGGCAGCGCA
NONE
OsAffx.8198.2.S1_at--836--9791Chr10:11601101..11601125 (25 bp)
TAACTGGCAGCGCACCGACGGTCAG
LOC_Os10g22940
OsAffx.8198.2.S1_at--1092--4631NONE
GCGTTCTCGGCGGATGTATCACTCC
NONE
OsAffx.8198.2.S1_at--45--4692Chr10:11600460..11600482 (23 bp)
GCGGATGTATCACTCCACCCAAAAT
LOC_Os10g22940
OsAffx.8198.2.S1_at--994--3032Chr02:16105242..16105262 (21 bp)
AATCCTTTATATTTTGGGGCGCAAG
NONE
OsAffx.8198.2.S1_at--536--7551Chr10:11600422..11600446 (25 bp)
GGGCGCAAGGAATTAATAGTTCCCA
LOC_Os10g22940
OsAffx.8198.2.S1_at--346--131Chr10:11600411..11600435 (25 bp)
ATTAATAGTTCCCATAGCAGTCAAA
LOC_Os10g22940
OsAffx.8198.2.S1_at--411--10031Chr10:11600406..11600430 (25 bp)
TAGTTCCCATAGCAGTCAAACCTCC
LOC_Os10g22940
OsAffx.8198.2.S1_at--966--271Chr10:11600402..11600422 (21 bp)
ATAGCAGTCAAACCTCCTAAGTTTA
LOC_Os10g22940
OsAffx.8198.2.S1_at--1082--2611Chr10:11600336..11600412 (25 bp)
AACCTCCTAAGTTTATACACAGCTC
LOC_Os10g22940
Target Sequence 
TTGGATGGACAATCCTACGAAGATTGTATGTAAAATCAAAGGTGTTTTTGATTATTATTCTGTGATGAACAATTGGGCAT
TGGAGATTATTGGTTTTGTATTTGGAATTTATTCACAAAGTGAATTTACAGGATACTGCTGTGATTTTATGTGGTCCGGT
CAGACCGGGCAGGGGTTGCCGAGAGAATCAATAAAGTTGTCATCCACTTTAAGAGTTCTTCGATTTGTGTTTACCGAGGT
TCGGCGGTCTAACTGGCAGCGCACCGACGGTCAGACCGGCGGCATTGCGGCGGTCAGACCGGCGGGCACACGGCGGTTAG
ACCGGCGGCGACAGGAGTCGGCAGCCGGCGTTCTCGGCGGATGTATCACTCCACCCAAAATCCTTTATATTTTGGGGCGC
AAGGAATTAATAGTTCCCATAGCAGTCAAACCTCCTAAGTTTATACACAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8198.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis