Browse Element(s) Details


OsAffx.218.1.A1_at

Description gb:NM_196153.1
DB_XREF= gi:37533665
TID=OsAffx.218.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0091J06.22), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g229705/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22950Os.25048.1.S1_at8/1110+11604242..11611524anther ethylene-upregulated protein ER1, putative, expressed
LOC_Os10g22960Os.46524.1.S1_at11/1110+11616411..11619646hydrolase, putative, expressed
LOC_Os10g22960Os.46524.1.S1_x_at11/1110+11616411..11619646hydrolase, putative, expressed
LOC_Os10g22960Os.46524.2.S1_x_at6/1110+11616411..11619646hydrolase, putative, expressed
LOC_Os10g22970OsAffx.218.1.A1_at5/1110+11630557..11630793hypothetical protein
LOC_Os10g22980Os.9046.1.S1_x_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22980Os.9046.1.S1_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22980Os.16062.1.S1_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.218.1.A1_at--99--9112Chr10:11630945..11630969 (25 bp)
TGCTCCTCTCTTTCTCGGCGGCGAA
NONE
OsAffx.218.1.A1_at--709--9511Chr10:11630933..11630957 (25 bp)
TCTCGGCGGCGAACCATCTCAACGA
NONE
OsAffx.218.1.A1_at--391--8391Chr10:11630926..11630950 (25 bp)
GGCGAACCATCTCAACGACGGCGAC
NONE
OsAffx.218.1.A1_at--346--1611Chr10:11630842..11630866 (25 bp)
AGCGTCGTGCGAGGTTTGTACCGAC
NONE
OsAffx.218.1.A1_at--1073--1651Chr10:11630752..11630776 (25 bp)
AGCCGAGTGCCGACGCGAGTCCGAC
LOC_Os10g22970
OsAffx.218.1.A1_at--1034--8931Chr10:11630641..11630665 (25 bp)
TGACGACTCCGCGGATCTGGCCGAG
LOC_Os10g22970
OsAffx.218.1.A1_at--475--391Chr10:11630592..11630616 (25 bp)
ATCACGGTGGGTGTTGAGCTCGCCA
LOC_Os10g22970
OsAffx.218.1.A1_at--567--8631Chr10:11630585..11630609 (25 bp)
TGGGTGTTGAGCTCGCCATGCTCTT
LOC_Os10g22970
OsAffx.218.1.A1_at--1079--611Chr10:11630568..11630592 (25 bp)
ATGCTCTTCCTTGGCGAATCCCGTG
LOC_Os10g22970
OsAffx.218.1.A1_at--881--5251Chr10:11630553..11630577 (25 bp)
GAATCCCGTGGTTGCAGCTGAGCGC
NONE
OsAffx.218.1.A1_at--562--2671Chr10:11630524..11630548 (25 bp)
AAGCGGAGGTCGGAGTCCTGGCGGC
NONE
Target Sequence 
TGCTCCTCTCTTTCTCGGCGGCGAACCATCTCAACGACGGCGACGGCGCGCCGACTCGCGGCAGCAGAGGAGGGGGAGCC
AAGCGTCGCCGCGGTTGAGGACGAGCGTCGTGCGAGGTTTGTACCGACGGTGGTCGGCGTCCTCGCCGAGCGCCTGCCTC
CCTCGCCAAGGAAGCCATGGAAGGAGGGGGGAGAGCCGAGTGCCGACGCGAGTCCGACCTTCGCCTCGCTGCGCTGAGGC
ACAACCACGGCCTCCAATCGGCCGACGCGGCGTCCCTCCCTCCCTGGCCATCCACCGACGACGCTGACGACTCCGCGGAT
CTGGCCGAGCCGTCCCCCGCCTCCGCCGACTCCATCACGGTGGGTGTTGAGCTCGCCATGCTCTTCCTTGGCGAATCCCG
TGGTTGCAGCTGAGCGCAGCGAAGCGGAGGTCGGAGTCCTGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.218.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis