Browse Element(s) Details


Os.16062.1.S1_at

Description gb:BI801354
DB_XREF= gi:16574058
DB_XREF=H047C11
CLONE=H047C11
TID=Os.16062.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.16062 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2298010/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22970OsAffx.218.1.A1_at5/1110+11630557..11630793hypothetical protein
LOC_Os10g22980Os.9046.1.S1_x_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22980Os.9046.1.S1_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22980Os.16062.1.S1_at10/1110+11649636..11654706Leucine Rich Repeat family protein, expressed
LOC_Os10g22990NANA10+11658205..11659209Phosphate-induced protein 1 conserved region containing protein
LOC_Os10g23004OsAffx.18355.1.S1_at11/1110+11662463..11665658hypothetical protein
LOC_Os10g23020NANA10+11669997..11670275hypothetical protein
LOC_Os10g23030OsAffx.6743.1.S1_at11/1110+11674593..11678357hypothetical protein
LOC_Os10g23030Os.54455.1.S1_at1/1110+11674593..11678357hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16062.1.S1_at--100--4951Chr10:11653140..11653164 (25 bp)
GCATTCCAGGACATGTCACGTTGGT
LOC_Os10g22980
Os.16062.1.S1_at--1068--8111Chr10:11653148..11653172 (25 bp)
GGACATGTCACGTTGGTTCTAGCAT
LOC_Os10g22980
Os.16062.1.S1_at--805--6611Chr10:11653159..11653183 (25 bp)
GTTGGTTCTAGCATGAATCTGCTTC
LOC_Os10g22980
Os.16062.1.S1_at--906--3051Chr10:11653174..11653198 (25 bp)
AATCTGCTTCATGTATTGGCTGTCA
LOC_Os10g22980
Os.16062.1.S1_at--316--751Chr10:11653184..11653208 (25 bp)
ATGTATTGGCTGTCACTGCCTCGTC
LOC_Os10g22980
Os.16062.1.S1_at--399--3831Chr10:11653377..11653401 (25 bp)
CTGCTCCCTAATGATCTCAACTTAA
LOC_Os10g22980
Os.16062.1.S1_at--791--711Chr10:11653387..11653411 (25 bp)
ATGATCTCAACTTAATTCTCTGAAA
LOC_Os10g22980
Os.16062.1.S1_at--970--1351NONE
AGAGCATGACTCTGTTTTCACTTCA
NONE
Os.16062.1.S1_at--421--1211Chr10:11653583..11653607 (25 bp)
AGTTCTAACCATGCAACTTCGGAAA
LOC_Os10g22980
Os.16062.1.S1_at--442--2271Chr10:11653627..11653651 (25 bp)
AAATCTCTACACTTCAACTACTTCA
LOC_Os10g22980
Os.16062.1.S1_at--638--2051Chr10:11653646..11653670 (25 bp)
ACTTCATCTACATATGACTCTTGAG
LOC_Os10g22980
Target Sequence 
GCATTCCAGGACATGTCACGTTGGTTCTAGCATGAATCTGCTTCATGTATTGGCTGTCACTGCCTCGTCTGTCCACAGTT
NCCGTGATCCAGGAACATNAATTAATACAGTTGGAAATGGGNCCTTATCATCATNCATCATGNNNNAANTCCCTGTCCCT
GNCTNNCTGTCCATCCATACCCTGGATGTNAAAAGNTGCACTCCTCCATAATTCCAACCTGNNCCATGCATCCACTGAAT
CCNCTGCTCCCTAATGATCTCAACTTAATTCTCTGAAAAAAAAAATCAATTCAGAGCATGACTCTGTTTTCACTTCAGAA
GAATCTTGCTGAAAACCTGCCACTTTGGAAATGAAAAATAAAANAAAAAGAANAATCTNCTGCACTGCAAGTCTGCAACT
GNCATNCTACATGNACTCTGCATTTNCTTCAGATTNTNTGNNATCTTGAGAAGAATCAAGTTCTAACCATGCAACTTCGG
AAANAAAAAGAAAAAGAAGAAAAAATCTCTACACTTCAACTACTTCATCTACATATGACTCTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis