Browse Element(s) Details


Os.54455.1.S1_at

Description gb:AK105203.1
DB_XREF= gi:32990412
TID=Os.54455.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54455 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E01, full insert sequence.
FL= gb:AK105203.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1349011/11expressed protein
LOC_Os02g346001/11Serine/threonine-protein kinase SAPK7, putative, expressed
LOC_Os02g456301/11hypothetical protein
LOC_Os09g136001/11hypothetical protein
LOC_Os10g230301/11hypothetical protein
LOC_Os09g281501/11Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os03g620601/11amidohydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13440OsAffx.18827.1.S1_at11/1111+7360559..7363322NB-ARC domain containing protein
LOC_Os11g13459OsAffx.20387.1.S1_x_at3/1111+7369479..7375466retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g13480NANA11+7377327..7379480hypothetical protein
LOC_Os11g13490Os.54455.1.S1_at11/1111+7387208..7390835expressed protein
LOC_Os11g13490OsAffx.7102.1.S1_at9/1111+7387208..7390835expressed protein
LOC_Os11g13500OsAffx.19701.1.S1_s_at2/1111+7393148..7395706hypothetical protein
LOC_Os11g13500OsAffx.19701.1.S1_at1/1111+7393148..7395706hypothetical protein
LOC_Os11g13510OsAffx.18829.1.S1_at11/1111+7400305..7403674NB-ARC domain containing protein
LOC_Os11g13520OsAffx.30952.1.S1_at11/1111+7405681..7408698hypothetical protein
LOC_Os11g13530OsAffx.30954.1.S1_at11/1111+7415097..7416470Serpin family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006730biological_processone-carbon compound metabolism
GO:0009850biological_processauxin metabolism
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008237molecular_functionmetallopeptidase activity
GO:0008270molecular_functionzinc ion binding
GO:0010178molecular_functionIAA-amino acid conjugate hydrolase activity
GO:0010179molecular_functionIAA-Ala conjugate hydrolase activity
GO:0010210molecular_functionIAA-Phe conjugate hydrolase activity
GO:0010211molecular_functionIAA-Leu conjugate hydrolase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54455.1.S1_at--812--4951Chr11:7387425..7387449 (25 bp)
GCATCAGCGGTTGCGACGTACGGAC
LOC_Os11g13490
Os.54455.1.S1_at--982--2132Chr11:7387390..7387414 (25 bp)
ACAGACGAAACGAGGGCGCGCGTCA
LOC_Os11g13490
Os.54455.1.S1_at--416--7571Chr11:7387377..7387401 (25 bp)
GGGCGCGCGTCAAGGCGTCTTCAAA
LOC_Os11g13490
Os.54455.1.S1_at--757--2411Chr11:7387345..7387369 (25 bp)
AAAAACAAGATACCGCTGCCTATGA
LOC_Os11g13490
Os.54455.1.S1_at--130--6491Chr11:7387337..7387361 (25 bp)
GATACCGCTGCCTATGACAATGACA
LOC_Os11g13490
Os.54455.1.S1_at--774--2231Chr11:7387321..7387345 (25 bp)
ACAATGACAGGGTGGGCCCGCCAGC
LOC_Os11g13490
Os.54455.1.S1_at--982--4791Chr11:7387291..7387315 (25 bp)
GCTCCCTCCCAATTCAAATGCAGAT
LOC_Os11g13490
Os.54455.1.S1_at--471--2291Chr11:7387276..7387300 (25 bp)
AAATGCAGATGTGCGCTTCCGTGTC
LOC_Os11g13490
Os.54455.1.S1_at--721--1291Chr11:7387270..7387294 (25 bp)
AGATGTGCGCTTCCGTGTCCAACGT
LOC_Os11g13490
Os.54455.1.S1_at--504--92361Chr12:27032814..27032858 (25 bp)
TCCGTGTCCAACGTTAAAATTTATG
NONE
Os.54455.1.S1_at--902--6811Chr11:7387209..7387233 (25 bp)
GTTTAATTCTATGGGACTAAATCCA
LOC_Os11g13490
Target Sequence 
GCATCAGCGGTTGCGACGTACGGACGGCGAGAGAGACAGACGAAACGAGGGCGCGCGTCAAGGCGTCTTCAAAAGAAAAA
AAAAAACAAGATACCGCTGCCTATGACAATGACAGGGTGGGCCCGCCAGCCACTAGCTCCCTCCCAATTCAAATGCAGAT
GTGCGCTTCCGTGTCCAACGTTAAAATTTATGAAAAAATTAAAATAAGTTAGGCCTTGTTTAATTCTATGGGACTAAATC
CA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54455.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis