Browse Element(s) Details


OsAffx.30952.1.S1_at

Description tigr:9639.m01243
TID=OsAffx.30952.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1352011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13490Os.54455.1.S1_at11/1111+7387208..7390835expressed protein
LOC_Os11g13490OsAffx.7102.1.S1_at9/1111+7387208..7390835expressed protein
LOC_Os11g13500OsAffx.19701.1.S1_s_at2/1111+7393148..7395706hypothetical protein
LOC_Os11g13500OsAffx.19701.1.S1_at1/1111+7393148..7395706hypothetical protein
LOC_Os11g13510OsAffx.18829.1.S1_at11/1111+7400305..7403674NB-ARC domain containing protein
LOC_Os11g13520OsAffx.30952.1.S1_at11/1111+7405681..7408698hypothetical protein
LOC_Os11g13530OsAffx.30954.1.S1_at11/1111+7415097..7416470Serpin family protein
LOC_Os11g13540OsAffx.30954.1.S1_at11/1111+7423597..7425072Serpin family protein, expressed
LOC_Os11g13540OsAffx.30954.2.S1_x_at1/1111+7423597..7425072Serpin family protein, expressed
LOC_Os11g13550NANA11+7427808..7428296hypothetical protein
LOC_Os11g13560OsAffx.30954.2.S1_x_at11/1111+7430098..7430897Serpin family protein
LOC_Os11g13560OsAffx.30954.2.S1_at11/1111+7430098..7430897Serpin family protein
LOC_Os11g13570Os.6098.1.A1_at10/1111+7433174..7434610PrMC3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30952.1.S1_at--1041--891Chr11:7408580..7408604 (25 bp)
AGGCGTCGTTGGTATTGTCCTCGAC
LOC_Os11g13520
OsAffx.30952.1.S1_at--521--9391Chr11:7408526..7408550 (25 bp)
TCGATCTCAGTGGAGTTGAACCGGG
LOC_Os11g13520
OsAffx.30952.1.S1_at--1157--2692Chr11:7407839..7407863 (25 bp)
AAGCTCAAGCTCGTTTCCTCATGGT
LOC_Os11g13520
OsAffx.30952.1.S1_at--690--9251Chr11:7407824..7407848 (25 bp)
TCCTCATGGTCCAACAGTGAACCGT
LOC_Os11g13520
OsAffx.30952.1.S1_at--981--3451Chr11:7407810..7407834 (25 bp)
CAGTGAACCGTTCAAGTGCCAGCGG
LOC_Os11g13520
OsAffx.30952.1.S1_at--1003--6751Chr11:7407801..7407825 (25 bp)
GTTCAAGTGCCAGCGGAGCTACGGA
LOC_Os11g13520
OsAffx.30952.1.S1_at--543--8831Chr11:7405936..7405960 (25 bp)
TGATAGTGCTCGTGTACGTGGACCC
LOC_Os11g13520
OsAffx.30952.1.S1_at--495--1911Chr11:7405921..7405945 (25 bp)
ACGTGGACCCCTTGGTCACTACGTG
LOC_Os11g13520
OsAffx.30952.1.S1_at--1116--491Chr11:7405871..7405895 (25 bp)
ATCGTGTCCCGATGTCCTTGCACTG
LOC_Os11g13520
OsAffx.30952.1.S1_at--1104--2531Chr11:7405840..7405864 (25 bp)
AACTCCGCATGGTACGTGGACCCCT
LOC_Os11g13520
OsAffx.30952.1.S1_at--459--4751Chr11:7405782..7405806 (25 bp)
GCTGAGCGACTTGTCGACGGACCAG
LOC_Os11g13520
Target Sequence 
AGGCGTCGTTGGTATTGTCCTCGACGGTTGGTGGCGGCGCAGACGAGGGAGAAGTCGATCTCAGTGGAGTTGAACCGGGG
GATGCGGTGGCAGCGCTCCCGCCGCCGCTGGTCTCCGCCTCTCCCCCAGCGCCCGCCGCCGTCGGCCACCTCAAGCGCCC
GACGCCGCTGGCAAGCTCAAGCTCGTTTCCTCATGGTCCAACAGTGAACCGTTCAAGTGCCAGCGGAGCTACGGAGTGTG
ATGATAGTGCTCGTGTACGTGGACCCCTTGGTCACTACGTGCGCCGGCAGCGCCGCATGGTAGAGCATCGTGTCCCGATG
TCCTTGCACTGTCCCGCAACTCCGCATGGTACGTGGACCCCTGGCGCTGTCGGGGTAGGAGCTGTTGTGGCAGACGCTGA
GCGACTTGTCGACGGACCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30952.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis