Browse Element(s) Details


Os.6098.1.A1_at

Description gb:AK065416.1
DB_XREF= gi:32975434
TID=Os.6098.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022N12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022N12, full insert sequence.
FL= gb:AK065416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1357010/11PrMC3, putative, expressed
LOC_Os01g034521/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13520OsAffx.30952.1.S1_at11/1111+7405681..7408698hypothetical protein
LOC_Os11g13530OsAffx.30954.1.S1_at11/1111+7415097..7416470Serpin family protein
LOC_Os11g13540OsAffx.30954.1.S1_at11/1111+7423597..7425072Serpin family protein, expressed
LOC_Os11g13540OsAffx.30954.2.S1_x_at1/1111+7423597..7425072Serpin family protein, expressed
LOC_Os11g13550NANA11+7427808..7428296hypothetical protein
LOC_Os11g13560OsAffx.30954.2.S1_x_at11/1111+7430098..7430897Serpin family protein
LOC_Os11g13560OsAffx.30954.2.S1_at11/1111+7430098..7430897Serpin family protein
LOC_Os11g13570Os.6098.1.A1_at10/1111+7433174..7434610PrMC3, putative, expressed
LOC_Os11g13580NANA11+7437492..7437719hypothetical protein
LOC_Os11g13590OsAffx.7104.1.S1_at11/1111+7439363..7439659expressed protein
LOC_Os11g13600NANA11+7442044..7448041retrotransposon protein, putative, unclassified
LOC_Os11g13610Os.31312.5.S1_x_at5/1111+7448890..7452093retrotransposon protein, putative, unclassified
LOC_Os11g13610Os.31312.2.S1_x_at3/1111+7448890..7452093retrotransposon protein, putative, unclassified
LOC_Os11g13620Os.54685.1.S1_at11/1111+7455864..7457242expressed protein
LOC_Os11g13620OsAffx.7080.1.S1_x_at1/1111+7455864..7457242expressed protein
LOC_Os11g13630NANA11+7458412..7459506esterase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6098.1.A1_at--766--6111Chr11:7433592..7433616 (25 bp)
TGAGGGTGTTCGAGTACCCCAACGC
LOC_Os11g13570
Os.6098.1.A1_at--776--8411Chr11:7433530..7433554 (25 bp)
GGCCGCGACCTCATGATACGCATCG
LOC_Os11g13570
Os.6098.1.A1_at--4--7431Chr11:7433423..7433447 (25 bp)
GTGTTCGTCCGCGTGTCAGCGTCGA
LOC_Os11g13570
Os.6098.1.A1_at--612--4151Chr11:7433378..7433402 (25 bp)
CGCCGACTTGTTTGGCTGGGTTAGC
LOC_Os11g13570
Os.6098.1.A1_at--322--4731Chr11:7433364..7433388 (25 bp)
GCTGGGTTAGCGTGTGTCTATGATA
LOC_Os11g13570
Os.6098.1.A1_at--5--5031Chr11:7433338..7433362 (25 bp)
GCAGTGCAGTGTATAGTCTCTTGGT
LOC_Os11g13570
Os.6098.1.A1_at--164--7151Chr11:7433323..7433347 (25 bp)
GTCTCTTGGTGATGTAATTTTTTCG
LOC_Os11g13570
Os.6098.1.A1_at--12--10451Chr11:7433294..7433318 (25 bp)
TTAGGTGTGGTTTGCTTGAGTGATT
LOC_Os11g13570
Os.6098.1.A1_at--602--1192Chr11:7433226..7433250 (25 bp)
AGTATTACTTTTGCTATGTTTGGTA
LOC_Os11g13570
Os.6098.1.A1_at--165--9791Chr11:7433178..7433202 (25 bp)
TAAGTTGGTGATTTCGTGAACGGAT
LOC_Os11g13570
Os.6098.1.A1_at--86--1951Chr11:7433146..7433170 (25 bp)
ACGGCTGATGTGGATTGATTGATGC
NONE
Target Sequence 
TGAGGGTGTTCGAGTACCCCAACGCCATCCACGCCTTNTACGTCTTCCCGGCGTTCGACGACGGCCGCGACCTCATGATA
CGCATCGCCGAGTTCGTCGCCGAGAGCGCCGCCGCCGCAGCCGCTGCCNGCGGCGGTGGCAGCGAGTGACCGGGCCACGG
AGCAGCAAGGTGTTCGTCCGCGTGTCAGCGTCGACGTGGCGTGCGTGGCGGTGGCGCCGACTTGTTTGGCTGGGTTAGCG
TGTGTCTATGATAAGCAGTGCAGTGTATAGTCTCTTGGTGATGTAATTTTTTCGAGGTTTAGGTGTGGTTTGCTTGAGTG
ATTAAGTAAGAAATAGTTAAATTAATGTGGACGATAATTATATATTAGTATTACTTTTGCTATGTTTGGTATGANATGTA
TGAGTAGTGTTGATTAAGTTGGTGATTTCGTGAACGGATGATGAAAACGGCTGATGTGGATTGATTGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6098.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis