Browse Element(s) Details


OsAffx.7104.1.S1_at

Description tigr:9639.m01250
TID=OsAffx.7104.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1359011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13530OsAffx.30954.1.S1_at11/1111+7415097..7416470Serpin family protein
LOC_Os11g13540OsAffx.30954.1.S1_at11/1111+7423597..7425072Serpin family protein, expressed
LOC_Os11g13540OsAffx.30954.2.S1_x_at1/1111+7423597..7425072Serpin family protein, expressed
LOC_Os11g13550NANA11+7427808..7428296hypothetical protein
LOC_Os11g13560OsAffx.30954.2.S1_x_at11/1111+7430098..7430897Serpin family protein
LOC_Os11g13560OsAffx.30954.2.S1_at11/1111+7430098..7430897Serpin family protein
LOC_Os11g13570Os.6098.1.A1_at10/1111+7433174..7434610PrMC3, putative, expressed
LOC_Os11g13580NANA11+7437492..7437719hypothetical protein
LOC_Os11g13590OsAffx.7104.1.S1_at11/1111+7439363..7439659expressed protein
LOC_Os11g13600NANA11+7442044..7448041retrotransposon protein, putative, unclassified
LOC_Os11g13610Os.31312.5.S1_x_at5/1111+7448890..7452093retrotransposon protein, putative, unclassified
LOC_Os11g13610Os.31312.2.S1_x_at3/1111+7448890..7452093retrotransposon protein, putative, unclassified
LOC_Os11g13620Os.54685.1.S1_at11/1111+7455864..7457242expressed protein
LOC_Os11g13620OsAffx.7080.1.S1_x_at1/1111+7455864..7457242expressed protein
LOC_Os11g13630NANA11+7458412..7459506esterase, putative
LOC_Os11g13640Os.38395.3.S1_x_at10/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.4.S1_x_at9/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.2.S1_x_at8/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.1.S1_at1/1111+7460230..7466343transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7104.1.S1_at--733--1651Chr11:7439565..7439589 (25 bp)
AGCGCGCAGCCGTTCGTCAGCAGGT
LOC_Os11g13590
OsAffx.7104.1.S1_at--1027--9391Chr11:7439552..7439576 (25 bp)
TCGTCAGCAGGTCCTCGAGTTCCAG
LOC_Os11g13590
OsAffx.7104.1.S1_at--943--6051Chr11:7439536..7439560 (25 bp)
GAGTTCCAGCAGCACCCGGCGTTGA
LOC_Os11g13590
OsAffx.7104.1.S1_at--273--1512Chr06:15170153..15170176 (24 bp)
AGCACCCGGCGTTGATCCAAGGCAG
NONE
OsAffx.7104.1.S1_at--116--4273Chr09:16646052..16646092 (24 bp)
CCGGCGTTGATCCAAGGCAGCAGCA
NONE
OsAffx.7104.1.S1_at--637--1511Chr11:7439497..7439521 (25 bp)
AGCAGTAGAGGCGTCCCGAGCCACG
LOC_Os11g13590
OsAffx.7104.1.S1_at--1127--5851Chr11:7439480..7439504 (25 bp)
GAGCCACGGTTCCCGCAGTCAGCTA
LOC_Os11g13590
OsAffx.7104.1.S1_at--696--8292Chr09:3495420..3495444 (25 bp)
GGCTTCGGCTCCAACCAGTGATGAT
NONE
OsAffx.7104.1.S1_at--717--9452Chr09:3495424..3495447 (24 bp)
TCGGCTCCAACCAGTGATGATGAAA
NONE
OsAffx.7104.1.S1_at--1091--8851Chr11:7439433..7439457 (25 bp)
TGATGATGAAACATGCTCACAAGGT
LOC_Os11g13590
OsAffx.7104.1.S1_at--1110--5531Chr11:7439426..7439450 (25 bp)
GAAACATGCTCACAAGGTGTTCGAT
LOC_Os11g13590
Target Sequence 
AGCGCGCAGCCGTTCGTCAGCAGGTCCTCGAGTTCCAGCAGCACCCGGCGTTGATCCAAGGCAGCAGCAGCAGTAGAGGC
GTCCCGAGCCACGGTTCCCGCAGTCAGCTACGCCGGCTTCGGCTCCAACCAGTGATGATGAAACATGCTCACAAGGTGTT
CGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis