Browse Element(s) Details


Os.54685.1.S1_at

Description gb:AK106466.1
DB_XREF= gi:32991675
TID=Os.54685.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54685 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-H05, full insert sequence.
FL= gb:AK106466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1362011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13560OsAffx.30954.2.S1_x_at11/1111+7430098..7430897Serpin family protein
LOC_Os11g13560OsAffx.30954.2.S1_at11/1111+7430098..7430897Serpin family protein
LOC_Os11g13570Os.6098.1.A1_at10/1111+7433174..7434610PrMC3, putative, expressed
LOC_Os11g13580NANA11+7437492..7437719hypothetical protein
LOC_Os11g13590OsAffx.7104.1.S1_at11/1111+7439363..7439659expressed protein
LOC_Os11g13600NANA11+7442044..7448041retrotransposon protein, putative, unclassified
LOC_Os11g13610Os.31312.5.S1_x_at5/1111+7448890..7452093retrotransposon protein, putative, unclassified
LOC_Os11g13610Os.31312.2.S1_x_at3/1111+7448890..7452093retrotransposon protein, putative, unclassified
LOC_Os11g13620Os.54685.1.S1_at11/1111+7455864..7457242expressed protein
LOC_Os11g13620OsAffx.7080.1.S1_x_at1/1111+7455864..7457242expressed protein
LOC_Os11g13630NANA11+7458412..7459506esterase, putative
LOC_Os11g13640Os.38395.3.S1_x_at10/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.4.S1_x_at9/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.2.S1_x_at8/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13640Os.38395.1.S1_at1/1111+7460230..7466343transposon protein, putative, Mutator sub-class
LOC_Os11g13650OsAffx.30957.1.S1_x_at11/1111+7468906..7469658expressed protein
LOC_Os11g13650OsAffx.30957.1.S1_s_at11/1111+7468906..7469658expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54685.1.S1_at--96--10011Chr11:7456767..7456791 (25 bp)
TAGCTAGCCCATCACCGACTGGAGG
LOC_Os11g13620
Os.54685.1.S1_at--156--8311Chr11:7456903..7456927 (25 bp)
GGCTCATTTTATCATAGGCATTGGT
LOC_Os11g13620
Os.54685.1.S1_at--1023--4931Chr11:7456920..7456944 (25 bp)
GCATTGGTGTAAAACTGGATGTCCC
LOC_Os11g13620
Os.54685.1.S1_at--865--7991Chr11:7456936..7456960 (25 bp)
GGATGTCCCATTTCGAATTTGATTT
LOC_Os11g13620
Os.54685.1.S1_at--735--192Chr11:7456957..7456981 (25 bp)
ATTTCTCAGCTTCATTGTAGTTAGA
LOC_Os11g13620
Os.54685.1.S1_at--460--5711Chr11:7457009..7457033 (25 bp)
GACTGAAATCTAGCCTTTGCCAAAT
LOC_Os11g13620
Os.54685.1.S1_at--71--10791Chr11:7457049..7457073 (25 bp)
TTGATGTTCAACATGGCCATATGTA
LOC_Os11g13620
Os.54685.1.S1_at--947--3071Chr11:7457134..7457158 (25 bp)
AATCAGATGACCTATATTGCCCTCG
LOC_Os11g13620
Os.54685.1.S1_at--679--71Chr11:7457149..7457173 (25 bp)
ATTGCCCTCGAAAACTGCATGCCAA
LOC_Os11g13620
Os.54685.1.S1_at--854--9051Chr11:7457164..7457188 (25 bp)
TGCATGCCAACCCAGGAAAACTGTA
LOC_Os11g13620
Os.54685.1.S1_at--337--1971Chr11:7457183..7457207 (25 bp)
ACTGTAGCCTATATTCTGATGATTC
LOC_Os11g13620
Target Sequence 
TAGCTAGCCCATCACCGACTGGAGGNTTTTTTTTTTTTTAACACANTATAGATTTGGNTTTCGACTATTTGNATATCTGG
NNTCATTTTATCATAGGCNATNGNCATGAAGNGCTANCNCAATCNAAANGNCANCGNATGNTNNGGCTCATTTTATCATA
GGCATTGGTGTAAAACTGGATGTCCCATTTCGAATTTGATTTCTCAGCTTCATTGTAGTTAGACATTATTAGGCATGTAA
AAAAAATTGTGACTGAAATCTAGCCTTTGCCAAATGTTCTGTTTTGTCTTTTGATGTTCAACATGGCCATATGTAATAGA
GAAGTGAAGCCATAAAATATGTTTGTTTAGGAGGCAAGGCATAAAAGATTGTATTAATCAGATGACCTATATTGCCCTCG
AAAACTGCATGCCAACCCAGGAAAACTGTAGCCTATATTCTGATGATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis