Browse Element(s) Details


OsAffx.30957.1.S1_s_at

Description tigr:9639.m01256
TID=OsAffx.30957.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0326011/11glycosyl transferase family 2 protein, putative
LOC_Os11g1365011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g03240Os.9753.1.S1_at11/117+1279706..1283371RNA recognition motif family protein, expressed
LOC_Os07g03250OsAffx.25729.2.S1_x_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.56321.1.S1_at11/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03250Os.50329.1.S1_s_at1/117+1297897..1302598Ovule development protein aintegumenta, putative, expressed
LOC_Os07g03260OsAffx.30957.1.S1_s_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.28245.1.S1_at11/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03260OsAffx.30957.1.S1_x_at1/117+1303627..1306347glycosyl transferase family 2 protein, putative
LOC_Os07g03270Os.47860.1.S1_at11/117+1312066..1314743DnaJ domain containing protein, expressed
LOC_Os07g03279Os.11164.1.S1_at11/117+1317333..1318097SCP-like extracellular protein, expressed
LOC_Os07g03288Os.50993.1.S1_at11/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03288Os.51641.1.S1_x_at5/117+1320492..1321426Basic form of pathogenesis-related protein 1 precursor, putative, expressed
LOC_Os07g03297OsAffx.22759.1.S1_at4/117+1324474..1325997retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g03310OsAffx.26144.3.S1_s_at11/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.1.S1_x_at6/117+1327207..1332928transposon protein, putative, Mutator sub-class
LOC_Os07g03310OsAffx.26144.3.S1_at5/117+1327207..1332928transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30957.1.S1_s_at--909--4012Chr11:7469566..7469590 (25 bp)
CGTCGTCAAGATGGACAATCCCAAC
LOC_Os11g13650
OsAffx.30957.1.S1_s_at--839--7192Chr11:7469565..7469589 (25 bp)
GTCGTCAAGATGGACAATCCCAACT
LOC_Os11g13650
OsAffx.30957.1.S1_s_at--56--9412Chr11:7469564..7469588 (25 bp)
TCGTCAAGATGGACAATCCCAACTG
LOC_Os11g13650
OsAffx.30957.1.S1_s_at--331--4012Chr11:7469563..7469587 (25 bp)
CGTCAAGATGGACAATCCCAACTGG
LOC_Os11g13650
OsAffx.30957.1.S1_s_at--280--7092Chr11:7469562..7469586 (25 bp)
GTCAAGATGGACAATCCCAACTGGT
LOC_Os11g13650
OsAffx.30957.1.S1_s_at--1078--9712Chr11:7469561..7469585 (25 bp)
TCAAGATGGACAATCCCAACTGGTC
LOC_Os11g13650
OsAffx.30957.1.S1_s_at--798--3192Chr11:7469560..7469584 (25 bp)
CAAGATGGACAATCCCAACTGGTCC
LOC_Os11g13650
OsAffx.30957.1.S1_s_at--351--2792Chr11:7469559..7469583 (25 bp)
AAGATGGACAATCCCAACTGGTCCA
LOC_Os11g13650
OsAffx.30957.1.S1_s_at--796--1312Chr11:7469558..7469582 (25 bp)
AGATGGACAATCCCAACTGGTCCAT
LOC_Os11g13650
OsAffx.30957.1.S1_s_at--1141--6232Chr11:7469557..7469581 (25 bp)
GATGGACAATCCCAACTGGTCCATC
LOC_Os11g13650
OsAffx.30957.1.S1_s_at--208--852Chr11:7469556..7469580 (25 bp)
ATGGACAATCCCAACTGGTCCATCT
LOC_Os11g13650
Target Sequence 
CGTCGTCAAGATGGACAATCCCAACTGGTCCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30957.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis