Browse Element(s) Details


Os.50329.1.S1_s_at

Description gb:AK120757.1
DB_XREF= gi:37990380
TID=Os.50329.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007D09, full insert sequence.
FL= gb:AK120757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3686011/11Cytochrome P450 family protein, expressed
LOC_Os07g032501/11Ovule development protein aintegumenta, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36830OsAffx.29482.4.S1_x_at11/118+23130391..23131998hypothetical protein
LOC_Os08g36840Os.26473.1.S1_at11/118+23140478..23148738Glycoprotein 3-alpha-L-fucosyltransferase A, putative, expressed
LOC_Os08g36850OsAffx.6050.1.S1_at11/118+23150251..23151866hypothetical protein
LOC_Os08g36860Os.50329.1.S1_s_at11/118+23155771..23161322Cytochrome P450 family protein, expressed
LOC_Os08g36870NANA8+23163126..23168870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36880OsAffx.9815.1.S1_at10/118+23169045..23170625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36890Os.43203.1.S1_x_at6/118+23174395..23177628hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007276biological_processgametogenesis
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0042127biological_processregulation of cell proliferation
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50329.1.S1_s_at--478--5051Chr08:23156176..23156200 (25 bp)
GCAGCAGGTGCTTGACACGTACTAC
LOC_Os08g36860
Os.50329.1.S1_s_at--706--1891Chr08:23156160..23156184 (25 bp)
ACGTACTACTGCTGATGGTGGCTGA
LOC_Os08g36860
Os.50329.1.S1_s_at--74--7731Chr08:23156144..23156168 (25 bp)
GGTGGCTGATGTGTCCTTGGTTTCT
LOC_Os08g36860
Os.50329.1.S1_s_at--840--7512Chr07:1299485..1299958 (25 bp)
GTGGATGCAATGGTCGATCGATCGA
LOC_Os07g03250
Os.50329.1.S1_s_at--556--6411Chr08:23156080..23156104 (25 bp)
GATCTCTCCTGTAATCCTCGGATAA
LOC_Os08g36860
Os.50329.1.S1_s_at--1095--2431Chr08:23156018..23156042 (25 bp)
AAAATCTCTCTTCACTTTTTCGTGT
LOC_Os08g36860
Os.50329.1.S1_s_at--24--7511Chr08:23155971..23155995 (25 bp)
GTGGTCCATGGATATCGTTCGATGA
LOC_Os08g36860
Os.50329.1.S1_s_at--1119--4831Chr08:23155932..23155956 (25 bp)
GCTAAACCTAGTCTTGGTGTGCCTA
LOC_Os08g36860
Os.50329.1.S1_s_at--546--1611Chr08:23155872..23155896 (25 bp)
AGCTGTTAGCTAGCATCGCTTTGCA
LOC_Os08g36860
Os.50329.1.S1_s_at--979--4971Chr08:23155860..23155884 (25 bp)
GCATCGCTTTGCATTGGGTTAATAC
LOC_Os08g36860
Os.50329.1.S1_s_at--861--7051Chr08:23155814..23155838 (25 bp)
GTAATTAAGCTCTCTAATCAGGGTT
LOC_Os08g36860
Target Sequence 
GCAGCAGGTGCTTGACACGTACTACTGCTGATGGTGGCTGATGTGTCCTTGGTTTCTTTTCGTCGCCGTGTGTGTGGATG
CAATGGTCGATCGATCGATCTCTCCTGTAATCCTCGGATAAAGCAAAGGCCATGGGATGGATGAGATGATCGTGTAGCAA
AATCTCTCTTCACTTTTTCGTGTGTGTGTGTTGGGTTGGATAATGGTGGTCCATGGATATCGTTCGATGATCGATGATGA
TGATGCTAAACCTAGTCTTGGTGTGCCTAGTGTAGCACTAGGAGTAGTAGTTTATCAATTGCTTAGCTGTTAGCTAGCAT
CGCTTTGCATTGGGTTAATACAGCTAGCTGTCAAGCTTATAAGTAATTAAGCTCTCTAATCAGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50329.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis