Browse Element(s) Details


Os.26473.1.S1_at

Description gb:AK099681.1
DB_XREF= gi:32984890
TID=Os.26473.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013071F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071F22, full insert sequence.
FL= gb:AK099681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3684011/11Glycoprotein 3-alpha-L-fucosyltransferase A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36800OsAffx.6048.1.S1_at11/118+23118375..23118878hypothetical protein
LOC_Os08g36810OsAffx.6049.1.S1_at9/118+23124016..23125325hypothetical protein
LOC_Os08g36820OsAffx.17364.1.S1_at11/118+23127848..23129090expressed protein
LOC_Os08g36830OsAffx.29482.4.S1_x_at11/118+23130391..23131998hypothetical protein
LOC_Os08g36840Os.26473.1.S1_at11/118+23140478..23148738Glycoprotein 3-alpha-L-fucosyltransferase A, putative, expressed
LOC_Os08g36850OsAffx.6050.1.S1_at11/118+23150251..23151866hypothetical protein
LOC_Os08g36860Os.50329.1.S1_s_at11/118+23155771..23161322Cytochrome P450 family protein, expressed
LOC_Os08g36870NANA8+23163126..23168870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36880OsAffx.9815.1.S1_at10/118+23169045..23170625transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0017083molecular_function4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26473.1.S1_at--933--1271Chr08:23148139..23148163 (25 bp)
AGATCATCCATGTGCAAAGCTTGAA
LOC_Os08g36840
Os.26473.1.S1_at--1078--2011Chr08:23148190..23148214 (25 bp)
ACATTTTCTTTTCTTGCGCCTTTCT
LOC_Os08g36840
Os.26473.1.S1_at--3--9571Chr08:23148201..23148225 (25 bp)
TCTTGCGCCTTTCTCTAGTTGAAAA
LOC_Os08g36840
Os.26473.1.S1_at--452--6931Chr08:23148236..23148260 (25 bp)
GTAGTTTCTGCTGTACGGTAAGCTA
LOC_Os08g36840
Os.26473.1.S1_at--350--4871Chr08:23148257..23148281 (25 bp)
GCTAGTCTGCTAGTATGTCTTATGT
LOC_Os08g36840
Os.26473.1.S1_at--14--771Chr08:23148271..23148295 (25 bp)
ATGTCTTATGTAGTACTTCCTCCGT
LOC_Os08g36840
Os.26473.1.S1_at--292--2771Chr08:23148426..23148450 (25 bp)
AAGAGGGAGTAGCAACCAATTCATG
LOC_Os08g36840
Os.26473.1.S1_at--37--7051Chr08:23148512..23148536 (25 bp)
GTAAATTTTCATCGACAGGCCAGAT
LOC_Os08g36840
Os.26473.1.S1_at--947--10571Chr08:23148546..23148570 (25 bp)
TTCTCACTTTTTTGGGTAACAGTCA
LOC_Os08g36840
Os.26473.1.S1_at--766--5011Chr08:23148668..23148692 (25 bp)
GCAGAACAACTGAAGTACCACCTTT
LOC_Os08g36840
Os.26473.1.S1_at--608--5331Chr08:23148679..23148702 (24 bp)
GAAGTACCACCTTTGTAATGACATA
LOC_Os08g36840
Target Sequence 
AGATCATCCATGTGCAAAGCTTGAAGTGATTTTTGTATAACTATGCTCTAGACATTTTCTTTTCTTGCGCCTTTCTCTAG
TTGAAAATATACAATGTGTAGTTTCTGCTGTACGGTAAGCTAGTCTGCTAGTATGTCTTATGTAGTACTTCCTCCGTTTC
ATAATGTAATTCATTCTTGCATTTCTCACATTCATATTGATTTAATGAATCTAGATAGATATATATGTCTAGATTTATCA
ACATCAATATGAATGTGGGAAATGCTAGAATGACTTACNTTGTGAAAAAGAGGGAGTAGCAACCAATTCATGCTCACACA
GATCTATNTACAATCAAAAGCACANCCTTGTTAGGCATTGAGATACATCGATTGTAAATTTTCATCGACAGGCCAGATGT
TTTGTTTTTCTCACTTTTTTGGGTAACAGTCAACAAGGGATTGACTTGGGACAATGAACGATATTGCTGTGATATAATGT
AATGTANNNNGTTATANCTGNAGTCACGGAGAAACATCAAAAAACGTTTGCAGAACAACTGAAGTACCACCTTTGTAATG
ACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26473.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis