Browse Element(s) Details


OsAffx.29482.4.S1_x_at

Description tigr:9636.m03700
TID=OsAffx.29482.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3683011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36790Os.4379.1.S1_at11/118+23101606..23108000bZIP transcription factor family protein, expressed
LOC_Os08g36800OsAffx.6048.1.S1_at11/118+23118375..23118878hypothetical protein
LOC_Os08g36810OsAffx.6049.1.S1_at9/118+23124016..23125325hypothetical protein
LOC_Os08g36820OsAffx.17364.1.S1_at11/118+23127848..23129090expressed protein
LOC_Os08g36830OsAffx.29482.4.S1_x_at11/118+23130391..23131998hypothetical protein
LOC_Os08g36840Os.26473.1.S1_at11/118+23140478..23148738Glycoprotein 3-alpha-L-fucosyltransferase A, putative, expressed
LOC_Os08g36850OsAffx.6050.1.S1_at11/118+23150251..23151866hypothetical protein
LOC_Os08g36860Os.50329.1.S1_s_at11/118+23155771..23161322Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29482.4.S1_x_at--117--4351Chr08:23131398..23131422 (25 bp)
CCAGATATCAGGAGCTGGGCGTCGA
LOC_Os08g36830
OsAffx.29482.4.S1_x_at--991--571Chr08:23131508..23131532 (25 bp)
ATCCACGGTCCATATCGGAGCTTGT
LOC_Os08g36830
OsAffx.29482.4.S1_x_at--893--231Chr08:23131519..23131543 (25 bp)
ATATCGGAGCTTGTCGCCGGCGACT
LOC_Os08g36830
OsAffx.29482.4.S1_x_at--146--8091Chr08:23131557..23131581 (25 bp)
GGAGCTCGTCACTAGCGGCCGCGTC
LOC_Os08g36830
OsAffx.29482.4.S1_x_at--806--591Chr08:23131590..23131614 (25 bp)
ATGCCTCAACATGCGGCCGCGTTCT
LOC_Os08g36830
OsAffx.29482.4.S1_x_at--1033--8531Chr08:23131757..23131781 (25 bp)
TGGAGCTTGCCGGTGGCCGCGTTCT
LOC_Os08g36830
OsAffx.29482.4.S1_x_at--774--3951Chr08:23131844..23131868 (25 bp)
CGGAGCTTGTTGTCGGCATCGCCGA
LOC_Os08g36830
OsAffx.29482.4.S1_x_at--329--5771Chr08:23131867..23131891 (25 bp)
GACGTCAGCTCGTCTACGCTCGCTG
LOC_Os08g36830
OsAffx.29482.4.S1_x_at--275--7731Chr08:23131899..23131923 (25 bp)
GGTGGCCCGCGCTCTTGTGTCTCAG
LOC_Os08g36830
OsAffx.29482.4.S1_x_at--994--4211Chr08:23131905..23131929 (25 bp)
CCGCGCTCTTGTGTCTCAGGGAGGT
LOC_Os08g36830
OsAffx.29482.4.S1_x_at--916--4031Chr08:23131940..23131964 (25 bp)
CGATCCCGTTGGGTCAGTATCCCAA
LOC_Os08g36830
Target Sequence 
CCAGATATCAGGAGCTGGGCGTCGAGGCGTCGTCATCGGCGGCCGCGTCCTCCCCCGTCCACGGTCCACACCGAACCCGA
ACCTCGTCGCTGGCAGCCGCATCCTTCCCCATCCACGGTCCATATCGGAGCTTGTCGCCGGCGACTGCGTCCTCCGTCGG
GAGCTCGTCACTAGCGGCCGCGTCCGTCGTCCATGCCTCAACATGCGGCCGCGTTCTCCACGCCGGAGCTCGTCGCCGGC
GCCGCCGCCATCACCACGCAGGATCCTCCGCCGTCCACGCCCCACATTGGAGCTCGTCGCCGGCGCCGTCTCTATCACCA
CGCAGGATCCTCCGCCGTCCATGCGACCATGCCCCACGCTGGAGCTTGCCGGTGGCCGCGTTCTCCACGCCGGAGCTCGT
CGGCGGCGGCCGCGTCCTCCACGCCGGAGCTCGTCATCGGCGCCGCCGGAGCTTGTTGTCGGCATCGCCGACGTCAGCTC
GTCTACGCTCGCTGCTCCCACGGTGGCCCGCGCTCTTGTGTCTCAGGGAGGTGGAGAGGGAGCGATCCCGTTGGGTCAGT
ATCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29482.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis