Browse Element(s) Details


Os.4379.1.S1_at

Description gb:AY323482.1
DB_XREF= gi:33087068
GEN=aba1
TID=Os.4379.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4379 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) bZIP transcription factor (aba1) mRNA, complete cds.
PROD=bZIP transcription factor
FL= gb:AY323482.1 gb:AB023288.1 gb:AK062347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3679011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36760Os.48784.1.S1_at4/118+23080371..23084602Remorin, C-terminal region family protein, expressed
LOC_Os08g36760Os.27966.1.S1_a_at1/118+23080371..23084602Remorin, C-terminal region family protein, expressed
LOC_Os08g36774Os.23300.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed
LOC_Os08g36774Os.27108.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed
LOC_Os08g36790Os.4379.1.S1_at11/118+23101606..23108000bZIP transcription factor family protein, expressed
LOC_Os08g36800OsAffx.6048.1.S1_at11/118+23118375..23118878hypothetical protein
LOC_Os08g36810OsAffx.6049.1.S1_at9/118+23124016..23125325hypothetical protein
LOC_Os08g36820OsAffx.17364.1.S1_at11/118+23127848..23129090expressed protein
LOC_Os08g36830OsAffx.29482.4.S1_x_at11/118+23130391..23131998hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4379.1.S1_at--1144--5351Chr08:23107558..23107582 (25 bp)
GAAGAACATTGACAGGTCCCTGGTA
LOC_Os08g36790
Os.4379.1.S1_at--851--5651Chr08:23107568..23107592 (25 bp)
GACAGGTCCCTGGTAAAATTTGAGT
LOC_Os08g36790
Os.4379.1.S1_at--359--1211Chr08:23107590..23107614 (25 bp)
AGTTATTGATAACCGGAGCTTGACA
LOC_Os08g36790
Os.4379.1.S1_at--776--5911Chr08:23107605..23107629 (25 bp)
GAGCTTGACAAGACACACCATATTT
LOC_Os08g36790
Os.4379.1.S1_at--1147--9791Chr08:23107630..23107654 (25 bp)
TAACCTTAAGGTTCTTGTACATATT
LOC_Os08g36790
Os.4379.1.S1_at--856--7891Chr08:23107639..23107663 (25 bp)
GGTTCTTGTACATATTGTCAGGATT
LOC_Os08g36790
Os.4379.1.S1_at--969--7931Chr08:23107659..23107683 (25 bp)
GGATTTCAAAACTCATCTCTCTGTT
LOC_Os08g36790
Os.4379.1.S1_at--750--6291Chr08:23107691..23107715 (25 bp)
GATGATCAACAGAGTCGAGTGTACT
LOC_Os08g36790
Os.4379.1.S1_at--475--7431Chr08:23107709..23107733 (25 bp)
GTGTACTAGTGCTTAACTTGCCCTG
LOC_Os08g36790
Os.4379.1.S1_at--211--1131Chr08:23107716..23107740 (25 bp)
AGTGCTTAACTTGCCCTGTCACCTT
LOC_Os08g36790
Os.4379.1.S1_at--357--7111Chr08:23107733..23107757 (25 bp)
GTCACCTTCAACTTACAGTTCTGCA
LOC_Os08g36790
Target Sequence 
GAAGAACATTGACAGGTCCCTGGTAAAATTTGAGTTATTGATAACCGGAGCTTGACAAGACACACCATATTTTAACCTTA
AGGTTCTTGTACATATTGTCAGGATTTCAAAACTCATCTCTCTGTTGTAAATTGATGATCAACAGAGTCGAGTGTACTAG
TGCTTAACTTGCCCTGTCACCTTCAACTTACAGTTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4379.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis