Browse Element(s) Details


Os.27108.1.S1_at

Description gb:AK069434.1
DB_XREF= gi:32979458
TID=Os.27108.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022E19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022E19, full insert sequence.
FL= gb:AK069434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3677411/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36740OsAffx.17362.1.S1_at11/118+23061693..23062433Helix-loop-helix DNA-binding domain containing protein
LOC_Os08g36750OsAffx.17363.1.S1_at10/118+23074014..23075064hypothetical protein
LOC_Os08g36760Os.48784.1.S1_at4/118+23080371..23084602Remorin, C-terminal region family protein, expressed
LOC_Os08g36760Os.27966.1.S1_a_at1/118+23080371..23084602Remorin, C-terminal region family protein, expressed
LOC_Os08g36774Os.23300.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed
LOC_Os08g36774Os.27108.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed
LOC_Os08g36790Os.4379.1.S1_at11/118+23101606..23108000bZIP transcription factor family protein, expressed
LOC_Os08g36800OsAffx.6048.1.S1_at11/118+23118375..23118878hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27108.1.S1_at--64--5871Chr08:23086876..23086900 (25 bp)
GAGCCTTGGACTTTAATTATCGATG
LOC_Os08g36774
Os.27108.1.S1_at--176--4791Chr08:23086828..23086852 (25 bp)
GCTCCAGCTACCGATTCTTTAGAAG
LOC_Os08g36774
Os.27108.1.S1_at--548--6311Chr08:23086568..23086828 (25 bp)
GATGACAACCAGCTAACCATTGAGG
LOC_Os08g36774
Os.27108.1.S1_at--986--5911Chr08:23086514..23086538 (25 bp)
GAGCTTGGCTTGAATGACATGGACA
LOC_Os08g36774
Os.27108.1.S1_at--1095--1691Chr08:23086463..23086487 (25 bp)
ACCACCAACCCATAATGTACTCAAT
LOC_Os08g36774
Os.27108.1.S1_at--637--3111Chr08:23086416..23086440 (25 bp)
AATATACTTATTGTGCTCCATGTTG
LOC_Os08g36774
Os.27108.1.S1_at--338--4791Chr08:23086402..23086426 (25 bp)
GCTCCATGTTGTAGTAAGTTGCGAT
LOC_Os08g36774
Os.27108.1.S1_at--617--4191Chr08:23086361..23086385 (25 bp)
CCTCAAGTTTTGTGTTAGCCATAGC
LOC_Os08g36774
Os.27108.1.S1_at--910--4431Chr08:23086344..23086368 (25 bp)
GCCATAGCTTTTGTTTCTGAGACGA
LOC_Os08g36774
Os.27108.1.S1_at--357--5851Chr08:23086303..23086327 (25 bp)
GACCAAATTTGCTTTATCAGAACGT
LOC_Os08g36774
Os.27108.1.S1_at--1155--4891Chr08:23086265..23086289 (25 bp)
GCTTAATTACATTGAACGCCACCGG
LOC_Os08g36774
Target Sequence 
GAGCCTTGGACTTTAATTATCGATGATGGATTGGCAGCTTCATTTGTTGCTCCAGCTACCGATTCTTTAGAAGATGACAA
CCAGCTAACCATTGAGGAGTATGTGAGGAGCTGGGAGCAGAATGAGGAGCTTGGCTTGAATGACATGGACACATCGTCTG
CTGACGCCGCCTACAACACCACCAACCCATAATGTACTCAATGTTGTAACATGTGATATTATCAAATATACTTATTGTGC
TCCATGTTGTAGTAAGTTGCGATATTTCTCATTTTAAATCCTCAAGTTTTGTGTTAGCCATAGCTTTTGTTTCTGAGACG
ATCGAAGATATTCAGTTGACCAAATTTGCTTTATCAGAACGTTTCTNGTTTCTTNGCTTAATTACATTGAACGCCACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis