Browse Element(s) Details


OsAffx.17362.1.S1_at

Description tigr:9636.m03691
TID=OsAffx.17362.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3674011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36720NANA8+23034232..23037563transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36730Os.47463.1.S1_x_at5/118+23040140..23043837transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36730Os.14491.2.S1_x_at4/118+23040140..23043837transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36740OsAffx.17362.1.S1_at11/118+23061693..23062433Helix-loop-helix DNA-binding domain containing protein
LOC_Os08g36750OsAffx.17363.1.S1_at10/118+23074014..23075064hypothetical protein
LOC_Os08g36760Os.48784.1.S1_at4/118+23080371..23084602Remorin, C-terminal region family protein, expressed
LOC_Os08g36760Os.27966.1.S1_a_at1/118+23080371..23084602Remorin, C-terminal region family protein, expressed
LOC_Os08g36774Os.23300.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed
LOC_Os08g36774Os.27108.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17362.1.S1_at--1122--4271Chr08:23062243..23062267 (25 bp)
CCTCGGTGAATCATCAGCCAGCTCA
LOC_Os08g36740
OsAffx.17362.1.S1_at--212--9011Chr08:23062237..23062261 (25 bp)
TGAATCATCAGCCAGCTCACGGCGT
LOC_Os08g36740
OsAffx.17362.1.S1_at--620--391Chr08:23062231..23062255 (25 bp)
ATCAGCCAGCTCACGGCGTCGTGTC
LOC_Os08g36740
OsAffx.17362.1.S1_at--896--7191Chr08:23062214..23062238 (25 bp)
GTCGTGTCGTCAGGTGGCGCCAACA
LOC_Os08g36740
OsAffx.17362.1.S1_at--419--5731Chr08:23062184..23062208 (25 bp)
GACGGGTACCGCGACCAGTACTACA
LOC_Os08g36740
OsAffx.17362.1.S1_at--39--4151Chr08:23062140..23062164 (25 bp)
CGCGTACAGCAACGCGGCAGGCGGT
LOC_Os08g36740
OsAffx.17362.1.S1_at--1061--8311Chr08:23062109..23062133 (25 bp)
GGCTCGGAGTACCACACGACGACGA
LOC_Os08g36740
OsAffx.17362.1.S1_at--48--3971Chr08:23061994..23062018 (25 bp)
CGGTGAACATCGACCCGGAGACGGT
LOC_Os08g36740
OsAffx.17362.1.S1_at--123--2491Chr08:23061989..23062013 (25 bp)
AACATCGACCCGGAGACGGTGCGGC
LOC_Os08g36740
OsAffx.17362.1.S1_at--450--9251Chr08:23061796..23061820 (25 bp)
TCCTCAAGACTCAGGTGCAGTCGCT
LOC_Os08g36740
OsAffx.17362.1.S1_at--930--9711Chr08:23061793..23061817 (25 bp)
TCAAGACTCAGGTGCAGTCGCTGGA
LOC_Os08g36740
Target Sequence 
CCTCGGTGAATCATCAGCCAGCTCACGGCGTCGTGTCGTCAGGTGGCGCCAACACCGGCGACGGGTACCGCGACCAGTAC
TACACCCAGCTGCTTCCCGCCGCCGCGTACAGCAACGCGGCAGGCGGTGGCCGCGGCTCGGAGTACCACACGACGACGAC
GACGCGGCCGGCTTCCGGCGGCGGCGGGGACGGCGGCGTGGGGCCGGCGGCGATGAGGGAGATGATCTTCCACATCGCGG
CGCTGCAGCCGGTGAACATCGACCCGGAGACGGTGCGGCCGCCGAAGCGCCGGAACGTGCGCATCTCGACGGACCCGCAG
AGCGTGGCGGCGCGGATGCGGCGGGAGCGCATCAGCGAGCGCATCCGCATCCTGCAGCGGCTCGTCCCCGGCGGCACCAA
GATGGACACCGCCTCCATGCTCGACGAGGCCATCCACTACGTCAAGTTCCTCAAGACTCAGGTGCAGTCGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis