Browse Element(s) Details


Os.23300.1.S1_at

Description gb:AK109905.1
DB_XREF= gi:32995114
TID=Os.23300.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-G04, full insert sequence.
FL= gb:AK109905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3677411/11zinc finger family protein, putative, expressed
LOC_Os08g0388011/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36740OsAffx.17362.1.S1_at11/118+23061693..23062433Helix-loop-helix DNA-binding domain containing protein
LOC_Os08g36750OsAffx.17363.1.S1_at10/118+23074014..23075064hypothetical protein
LOC_Os08g36760Os.48784.1.S1_at4/118+23080371..23084602Remorin, C-terminal region family protein, expressed
LOC_Os08g36760Os.27966.1.S1_a_at1/118+23080371..23084602Remorin, C-terminal region family protein, expressed
LOC_Os08g36774Os.23300.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed
LOC_Os08g36774Os.27108.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed
LOC_Os08g36790Os.4379.1.S1_at11/118+23101606..23108000bZIP transcription factor family protein, expressed
LOC_Os08g36800OsAffx.6048.1.S1_at11/118+23118375..23118878hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23300.1.S1_at--618--6592Chr08:1846138..1846162 (25 bp)
GATTGCTCGGCGAACTTCTTGGGAA
LOC_Os08g03880
Os.23300.1.S1_at--841--3912Chr08:1846145..1846169 (25 bp)
CGGCGAACTTCTTGGGAAGCAACCT
LOC_Os08g03880
Os.23300.1.S1_at--901--8372Chr08:1846360..1846384 (25 bp)
GGCGAGTTCGATTCCATGAGCTTGT
LOC_Os08g03880
Os.23300.1.S1_at--393--3592Chr08:1846380..1846404 (25 bp)
CTTGTTGCAAGGATTGGAGTGGTCA
LOC_Os08g03880
Os.23300.1.S1_at--427--6895Chr11:26690332..26690356 (25 bp)
GTATAATCCTTGTTCTAGTTAGTTA
NONE
Os.23300.1.S1_at--950--10014Chr08:1846469..1846493 (25 bp)
TAGTTATTTGGTTTCCTTAGACAGT
LOC_Os08g03880
Os.23300.1.S1_at--662--7074Chr11:26690432..26690455 (24 bp)
GTCAATTTTGATTTTACCTCTAGCA
NONE
Os.23300.1.S1_at--1138--10454Chr08:1846563..1846587 (25 bp)
TTACCTCTAGCAGGAACATAGCAGC
LOC_Os08g03880
Os.23300.1.S1_at--511--295Chr11:26690462..26690486 (25 bp)
ATAGCAGCAGCAGTATTGTCGGTTC
NONE
Os.23300.1.S1_at--1012--5055Chr11:26690468..26690492 (25 bp)
GCAGCAGTATTGTCGGTTCAGCAAC
NONE
Os.23300.1.S1_at--465--3255Chr11:26690489..26690513 (25 bp)
CAACCGACCTATCCATGTACTATAA
NONE
Target Sequence 
GATTGCTCGGCGAACTTCTTGGGAAGCAACCTAAAGCGATCGAGCTAAAGGTGGACAGCAAGTCTGCCTTGGCGCTGGCA
AAGAACCCTGTNTTCCATGAGCGCAGCAAGCATATTGATTTGCGCNATCACTTCATCAGAAGCTGCTTGGAGGAAGGAAG
CATCAGCGCCAGCTTCATCACCACCATGGACCAGCTCGCTGACATTCTAACGAAGGCATTGGGGCGAGTTCGATTCCATG
AGCTTGTTGCAAGGATTGGAGTGGTCAAGATTAGTTCAGAATAGAAGAACAAGGATTAAGGGGAGATTGTTAGTATAATC
CTTGTTCTAGTTAGTTATTTGGTTTCCTTAGACAGTAAGCTATAGGCTNCAGCTGTTACTCGGTTGTCAGACNGCTGCTA
TTAGTGGTAGTAGTCAATTTTGATTTTACCTCTAGCAGGAACATAGCAGCAGCAGTATTGTCGGTTCAGCAACCGACCTA
TCCATGTACTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis