Browse Element(s) Details


OsAffx.6048.1.S1_at

Description tigr:9636.m03697
TID=OsAffx.6048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3680011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36774Os.23300.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed
LOC_Os08g36774Os.27108.1.S1_at11/118+23086251..23098217zinc finger family protein, putative, expressed
LOC_Os08g36790Os.4379.1.S1_at11/118+23101606..23108000bZIP transcription factor family protein, expressed
LOC_Os08g36800OsAffx.6048.1.S1_at11/118+23118375..23118878hypothetical protein
LOC_Os08g36810OsAffx.6049.1.S1_at9/118+23124016..23125325hypothetical protein
LOC_Os08g36820OsAffx.17364.1.S1_at11/118+23127848..23129090expressed protein
LOC_Os08g36830OsAffx.29482.4.S1_x_at11/118+23130391..23131998hypothetical protein
LOC_Os08g36840Os.26473.1.S1_at11/118+23140478..23148738Glycoprotein 3-alpha-L-fucosyltransferase A, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6048.1.S1_at--902--4611Chr08:23118509..23118533 (25 bp)
GCGAGCAGGGCAGGACGGTAATGGT
LOC_Os08g36800
OsAffx.6048.1.S1_at--978--791Chr08:23118600..23118624 (25 bp)
ATGGGCGTGGGATGGAGCTTCGAGG
LOC_Os08g36800
OsAffx.6048.1.S1_at--838--2891Chr08:23118627..23118651 (25 bp)
AAGGAACAGGGCATCACGGGCGCGG
LOC_Os08g36800
OsAffx.6048.1.S1_at--522--371Chr08:23118639..23118663 (25 bp)
ATCACGGGCGCGGTCAAATGGCACG
LOC_Os08g36800
OsAffx.6048.1.S1_at--1109--3271Chr08:23118653..23118677 (25 bp)
CAAATGGCACGGAGGACGGGCTGGC
LOC_Os08g36800
OsAffx.6048.1.S1_at--23--9211Chr08:23118696..23118720 (25 bp)
TGCCATGGCGCTAGCTCCGAGCGGA
LOC_Os08g36800
OsAffx.6048.1.S1_at--898--5571Chr08:23118769..23118793 (25 bp)
GAAAGGGAGCTCGAGCCGTGCCAAT
LOC_Os08g36800
OsAffx.6048.1.S1_at--727--2871Chr08:23118771..23118795 (25 bp)
AAGGGAGCTCGAGCCGTGCCAATTC
LOC_Os08g36800
OsAffx.6048.1.S1_at--219--811Chr08:23118809..23118833 (25 bp)
ATGGGAGCGGGAGGCACTGCCTCAG
LOC_Os08g36800
OsAffx.6048.1.S1_at--446--8251Chr08:23118821..23118845 (25 bp)
GGCACTGCCTCAGGGTTTTGGACGA
LOC_Os08g36800
OsAffx.6048.1.S1_at--568--1832Chr08:23118824..23118848 (25 bp)
ACTGCCTCAGGGTTTTGGACGAACG
LOC_Os08g36800
Target Sequence 
GCGAGCAGGGCAGGACGGTAATGGTGCGGCGGCTTGGAGCGAACTCGGGCGAGCGAAGGGGAACCGAACGAGAGGGGGAG
GGGCGGCTTTTATGGGCGTGGGATGGAGCTTCGAGGGGAAGGAACAGGGCATCACGGGCGCGGTCAAATGGCACGGAGGA
CGGGCTGGCGCGGCGCGGCTGCCCCTCTGCCATGGCGCTAGCTCCGAGCGGAGGGAGAGCAGAGGCCGGGCTGAGAGAGG
AAAGTGGGAAACGGAGAGGGGAAAGGGAGCTCGAGCCGTGCCAATTCGGGGAGGAGAGGGATGGGAGCGGGAGGCACTGC
CTCAGGGTTTTGGACGAACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis