Browse Element(s) Details


OsAffx.6049.1.S1_at

Description tigr:9636.m03698
TID=OsAffx.6049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g368109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36790Os.4379.1.S1_at11/118+23101606..23108000bZIP transcription factor family protein, expressed
LOC_Os08g36800OsAffx.6048.1.S1_at11/118+23118375..23118878hypothetical protein
LOC_Os08g36810OsAffx.6049.1.S1_at9/118+23124016..23125325hypothetical protein
LOC_Os08g36820OsAffx.17364.1.S1_at11/118+23127848..23129090expressed protein
LOC_Os08g36830OsAffx.29482.4.S1_x_at11/118+23130391..23131998hypothetical protein
LOC_Os08g36840Os.26473.1.S1_at11/118+23140478..23148738Glycoprotein 3-alpha-L-fucosyltransferase A, putative, expressed
LOC_Os08g36850OsAffx.6050.1.S1_at11/118+23150251..23151866hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6049.1.S1_at--853--10231Chr08:23125271..23125295 (25 bp)
TTTGGCCGCGAGCTCGTTGGCCTCT
LOC_Os08g36810
OsAffx.6049.1.S1_at--565--9551Chr08:23125215..23125239 (25 bp)
TCTTCCCACGACAGTGCCGGATCTG
LOC_Os08g36810
OsAffx.6049.1.S1_at--752--10631Chr08:23125213..23125237 (25 bp)
TTCCCACGACAGTGCCGGATCTGGC
LOC_Os08g36810
OsAffx.6049.1.S1_at--880--9231Chr08:23125080..23125099 (20 bp)
TCCATCCCCATGTCGCGACGATGTT
LOC_Os08g36810
OsAffx.6049.1.S1_at--1020--4171NONE
CCCATGTCGCGACGATGTTGTCGGA
NONE
OsAffx.6049.1.S1_at--825--7231NONE
GTCGCGACGATGTTGTCGGAGTTCA
NONE
OsAffx.6049.1.S1_at--1160--1871Chr08:23124057..23124079 (23 bp)
ACGATGTTGTCGGAGTTCATGGCAC
LOC_Os08g36810
OsAffx.6049.1.S1_at--1018--711Chr08:23124054..23124078 (25 bp)
ATGTTGTCGGAGTTCATGGCACCAC
LOC_Os08g36810
OsAffx.6049.1.S1_at--621--10751Chr08:23124051..23124075 (25 bp)
TTGTCGGAGTTCATGGCACCACGGG
LOC_Os08g36810
OsAffx.6049.1.S1_at--14--7191Chr08:23124049..23124073 (25 bp)
GTCGGAGTTCATGGCACCACGGGCC
LOC_Os08g36810
OsAffx.6049.1.S1_at--829--8011Chr08:23124046..23124070 (25 bp)
GGAGTTCATGGCACCACGGGCCCCA
LOC_Os08g36810
Target Sequence 
TTTGGCCGCGAGCTCGTTGGCCTCTTGCCCTCCCTTCTCTACGAGCGGCGGCGGCCTCTTCCCACGACAGTGCCGGATCT
GGCCGCCAACTTCTTCCCTCTCCCCCCTCTTCTCGCAGCAGCCGAGGGACCATCGGCGGCGGCGGATCCTCTCCCCCTCC
CTTCTTCACGAGCGTCGCATCAGCTGGCCTCTCCCCTCCATCCCCATGTCGCGACGATGTTGTCGGAGTTCATGGCACCA
CGGGCCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis