Browse Element(s) Details


OsAffx.6050.1.S1_at

Description tigr:9636.m03702
TID=OsAffx.6050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3685011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g36810OsAffx.6049.1.S1_at9/118+23124016..23125325hypothetical protein
LOC_Os08g36820OsAffx.17364.1.S1_at11/118+23127848..23129090expressed protein
LOC_Os08g36830OsAffx.29482.4.S1_x_at11/118+23130391..23131998hypothetical protein
LOC_Os08g36840Os.26473.1.S1_at11/118+23140478..23148738Glycoprotein 3-alpha-L-fucosyltransferase A, putative, expressed
LOC_Os08g36850OsAffx.6050.1.S1_at11/118+23150251..23151866hypothetical protein
LOC_Os08g36860Os.50329.1.S1_s_at11/118+23155771..23161322Cytochrome P450 family protein, expressed
LOC_Os08g36870NANA8+23163126..23168870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36880OsAffx.9815.1.S1_at10/118+23169045..23170625transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g36890Os.43203.1.S1_x_at6/118+23174395..23177628hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6050.1.S1_at--975--1031Chr08:23150331..23150355 (25 bp)
AGGTGCTGGTCAACAGTGTGGACCT
LOC_Os08g36850
OsAffx.6050.1.S1_at--29--9111Chr08:23150334..23150358 (25 bp)
TGCTGGTCAACAGTGTGGACCTAGT
LOC_Os08g36850
OsAffx.6050.1.S1_at--374--7091Chr08:23150339..23150363 (25 bp)
GTCAACAGTGTGGACCTAGTGAAGG
LOC_Os08g36850
OsAffx.6050.1.S1_at--523--2111Chr08:23150343..23150367 (25 bp)
ACAGTGTGGACCTAGTGAAGGTGCT
LOC_Os08g36850
OsAffx.6050.1.S1_at--1026--1031Chr08:23150361..23150385 (25 bp)
AGGTGCTGTCGCTTCATATGGGAGC
LOC_Os08g36850
OsAffx.6050.1.S1_at--342--9111Chr08:23150364..23150388 (25 bp)
TGCTGTCGCTTCATATGGGAGCTGG
LOC_Os08g36850
OsAffx.6050.1.S1_at--926--8711Chr08:23150367..23150391 (25 bp)
TGTCGCTTCATATGGGAGCTGGCTG
LOC_Os08g36850
OsAffx.6050.1.S1_at--262--4911Chr08:23150371..23150392 (22 bp)
GCTTCATATGGGAGCTGGCTGGACA
LOC_Os08g36850
OsAffx.6050.1.S1_at--270--8471Chr08:23150458..23150477 (20 bp)
TGGCTGGACAAATGTTCTTGGCCTC
LOC_Os08g36850
OsAffx.6050.1.S1_at--817--731Chr08:23150464..23150488 (25 bp)
ATGTTCTTGGCCTCTATGGCGACGA
LOC_Os08g36850
OsAffx.6050.1.S1_at--757--8791Chr08:23150465..23150489 (25 bp)
TGTTCTTGGCCTCTATGGCGACGAA
LOC_Os08g36850
Target Sequence 
AGGTGCTGGTCAACAGTGTGGACCTAGTGAAGGTGCTGTCGCTTCATATGGGAGCTGGCTGGACAAATGTTCTTGGCCTC
TATGGCGACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis