Browse Element(s) Details


Os.43203.1.S1_x_at

Description gb:BI803043
DB_XREF= gi:16575747
DB_XREF=H098F09
CLONE=H098F09
TID=Os.43203.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686C03.7 (P0686C03.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1190010/11expressed protein
LOC_Os08g403509/11expressed protein
LOC_Os08g381909/11expressed protein
LOC_Os05g343308/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g368906/11hypothetical protein
LOC_Os12g159805/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11880OsAffx.19405.1.S1_at9/119+6664743..6665826hypothetical protein
LOC_Os09g11890Os.53891.1.S1_at10/119+6672037..6677975expressed protein
LOC_Os09g11900Os.43203.1.S1_x_at10/119+6686847..6690306expressed protein
LOC_Os09g11910OsAffx.9815.1.S1_at9/119+6693217..6697761transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g11920OsAffx.17654.3.S1_x_at11/119+6702072..6704049transposon protein, putative, unclassified
LOC_Os09g11920OsAffx.17654.2.S1_at8/119+6702072..6704049transposon protein, putative, unclassified
LOC_Os09g11930Os.51841.1.S1_x_at1/119+6708215..6709112hypothetical protein
LOC_Os09g11930OsAffx.3469.1.S1_x_at1/119+6708215..6709112hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43203.1.S1_x_at--77--5356Chr08:24068566..24068590 (25 bp)
GAAGTTGTGTCCAAGGTTCTCTCTC
LOC_Os08g38190
Os.43203.1.S1_x_at--1035--6712Chr08:24068581..24068605 (25 bp)
GTTCTCTCTCGGGACAATTCCAATA
LOC_Os08g38190
Os.43203.1.S1_x_at--17--416Chr08:24068649..24068673 (25 bp)
ATCAGTGACACCGACAGAAGCAGCA
LOC_Os08g38190
Os.43203.1.S1_x_at--272--2435Chr08:24068696..24068720 (25 bp)
AAAAGCAAAGTTCAGCCATTCTCCA
LOC_Os08g38190
Os.43203.1.S1_x_at--1083--4436Chr08:24068710..24068734 (25 bp)
GCCATTCTCCATGCAGAAGTTGTCG
LOC_Os08g38190
Os.43203.1.S1_x_at--221--1435Chr08:24068819..24068843 (25 bp)
AGAACAATTTGCTCCTTCGACGTAT
LOC_Os08g38190
Os.43203.1.S1_x_at--30--6897Chr08:24068840..24068864 (25 bp)
GTATCTTGAGCCTTTCCCAGGGTAA
LOC_Os08g38190
Os.43203.1.S1_x_at--112--2055Chr08:24068864..24068888 (25 bp)
ACTTAAATCTGTCCTAGTCTCCTTT
LOC_Os08g38190
Os.43203.1.S1_x_at--981--10056Chr08:24068878..24068902 (25 bp)
TAGTCTCCTTTATGATCTTCTGCAC
LOC_Os08g38190
Os.43203.1.S1_x_at--125--10611Chr09:6687068..6687092 (25 bp)
TTCTGCACTGTGATGAACTCTATCT
LOC_Os09g11900
Os.43203.1.S1_x_at--597--7115Chr08:24069013..24069037 (25 bp)
GTCATCCTATGGCAAACTTTTGTGG
NONE
Target Sequence 
GAAGTTGTGTCCAAGGTTCTCTCTCGGGACAATTCCAATACCACGTTTTTGAAAAATGCNGGTCTGCAGATGAGCTCCAA
GAAATCAGTGACACCGACAGAAGCAGCACTTCAGGAAGAACTTGCAGCTGAAAAGCAAAGTTCAGCCATTCTCCATGCAG
AAGTTGTCGAACTAAAAGAACAAGCAAATCTTGCAAATGAAGCNCTGGCAAAGACTCAAAAGGAGTTGGCAGAGTTCAAG
CAGCAGCAGGAAGAGAACAATTTGCTCCTTCGACGTATCTTGAGCCTTTCCCAGGGTAACTTAAATCTGTCCTAGTCTCC
TTTATGATCTTCTGCACTGTGATGAACTCTATCTACTTATATTAGTTGTTTGATGGTTCTGTGAACTTATTGTCATGTGG
TGGACTTGATTACTGTGAAATGATGTTTGGTGCTATGGTGGACTTAATGTCATCCTATGGCAAACTTTTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43203.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis