Browse Element(s) Details


OsAffx.17654.2.S1_at

Description tigr:9637.m00920
TID=OsAffx.17654.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g119208/11transposon protein, putative, unclassified
LOC_Os02g254604/11transposon protein, putative, unclassified
LOC_Os06g137704/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11890Os.53891.1.S1_at10/119+6672037..6677975expressed protein
LOC_Os09g11900Os.43203.1.S1_x_at10/119+6686847..6690306expressed protein
LOC_Os09g11910OsAffx.9815.1.S1_at9/119+6693217..6697761transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g11920OsAffx.17654.3.S1_x_at11/119+6702072..6704049transposon protein, putative, unclassified
LOC_Os09g11920OsAffx.17654.2.S1_at8/119+6702072..6704049transposon protein, putative, unclassified
LOC_Os09g11930Os.51841.1.S1_x_at1/119+6708215..6709112hypothetical protein
LOC_Os09g11930OsAffx.3469.1.S1_x_at1/119+6708215..6709112hypothetical protein
LOC_Os09g11940OsAffx.1646.1.S1_x_at1/119+6720117..6725646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g11940OsAffx.22368.1.S1_x_at1/119+6720117..6725646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g11950NANA9+6726667..6729490retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17654.2.S1_at--475--8691Chr09:6703653..6703738 (25 bp)
TGTGCCCATCGATGGACTCGAGAAG
LOC_Os09g11920
OsAffx.17654.2.S1_at--749--7291Chr09:6703654..6703739 (25 bp)
GTGCCCATCGATGGACTCGAGAAGC
LOC_Os09g11920
OsAffx.17654.2.S1_at--305--9171Chr09:6703655..6703740 (25 bp)
TGCCCATCGATGGACTCGAGAAGCA
LOC_Os09g11920
OsAffx.17654.2.S1_at--322--4551Chr09:6703656..6703741 (25 bp)
GCCCATCGATGGACTCGAGAAGCAC
LOC_Os09g11920
OsAffx.17654.2.S1_at--501--4173Chr09:6703723..6703742 (20 bp)
CCCATCGATGGACTCGAGAAGCACG
LOC_Os09g11920
OsAffx.17654.2.S1_at--712--4333Chr09:6703723..6703743 (21 bp)
CCATCGATGGACTCGAGAAGCACGG
LOC_Os09g11920
OsAffx.17654.2.S1_at--163--3553Chr09:6703723..6703744 (22 bp)
CATCGATGGACTCGAGAAGCACGGT
LOC_Os09g11920
OsAffx.17654.2.S1_at--808--511NONE
ATCGATGGACTCGAGAAGCACGGTC
NONE
OsAffx.17654.2.S1_at--72--9393Chr09:6703723..6703746 (24 bp)
TCGATGGACTCGAGAAGCACGGTCT
LOC_Os09g11920
Target Sequence 
TGTGCCCATCGATGGACTCGAGAAGCACGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17654.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis