Browse Element(s) Details


OsAffx.3469.1.S1_x_at

Description tigr:9631.m03957
TID=OsAffx.3469.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4115011/11hypothetical protein
LOC_Os09g119301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41120Os.54188.1.S1_at10/113+22811337..22816001expressed protein
LOC_Os03g41130Os.57170.1.S1_at11/113+22818103..22818679expressed protein
LOC_Os03g41140OsAffx.25464.1.S1_at11/113+22825513..22826543Transposable element protein, putative, Transposase_28
LOC_Os03g41150OsAffx.3469.1.S1_x_at11/113+22834620..22835063hypothetical protein
LOC_Os03g41154NANA3+22837036..22837236hypothetical protein
LOC_Os03g41160OsAffx.3470.1.S1_at11/113+22839409..22840241hypothetical protein
LOC_Os03g41170Os.53434.1.S1_at11/113+22847035..22850167expressed protein
LOC_Os03g41180Os.46306.1.S1_x_at8/113+22855491..22858586transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3469.1.S1_x_at--377--1251Chr03:22834674..22834698 (25 bp)
AGATTCAGGGAGGAGTTAAGATCCA
LOC_Os03g41150
OsAffx.3469.1.S1_x_at--771--9772Chr10:4643216..4643235 (20 bp)
TAAGATCCAGATGGTCAAGGATACC
NONE
OsAffx.3469.1.S1_x_at--1018--10633Chr11:28220360..28220620 (25 bp)
TTCGCAACAGGCTTCACGTGGTGTG
NONE
OsAffx.3469.1.S1_x_at--624--7191Chr03:22834808..22834832 (25 bp)
GTCGGTGTTCGCGAATGGAATTGAA
LOC_Os03g41150
OsAffx.3469.1.S1_x_at--531--2331Chr03:22834722..22834979 (25 bp)
AAAGTTGGAGGTGAGGCAGCAGCAT
LOC_Os03g41150
OsAffx.3469.1.S1_x_at--80--3411Chr03:22834971..22834995 (25 bp)
CAGCAGCATGCAACGGCTCGCATGG
LOC_Os03g41150
OsAffx.3469.1.S1_x_at--1079--1511Chr03:22834972..22834996 (25 bp)
AGCAGCATGCAACGGCTCGCATGGC
LOC_Os03g41150
OsAffx.3469.1.S1_x_at--276--4991Chr03:22834976..22835000 (25 bp)
GCATGCAACGGCTCGCATGGCAGGA
LOC_Os03g41150
OsAffx.3469.1.S1_x_at--1063--651Chr03:22834978..22835002 (25 bp)
ATGCAACGGCTCGCATGGCAGGAGC
LOC_Os03g41150
OsAffx.3469.1.S1_x_at--744--2571Chr03:22834982..22835006 (25 bp)
AACGGCTCGCATGGCAGGAGCGGCA
LOC_Os03g41150
OsAffx.3469.1.S1_x_at--579--1451Chr03:22835006..22835030 (25 bp)
AGCAAGGCAGGAGGCCGACTTCGAT
LOC_Os03g41150
Target Sequence 
AGATTCAGGGAGGAGTTAAGATCCAGATGGTCAAGGATACCGGGTGACAAAGTTGGATACGAGATGGCATACGGTAGATG
GACACCGTGTGGGAGAGATCTTCGCAACAGGCTTCACGTGGTGTGCGTGCAAGCGTCGGTGTTCGCGAATGGAATTGAAA
GAGAAAAGTTGGAGGTGAGGCAGCAGCATGCAACGGCTCGCATGGCAGGAGCGGCAGCAAGGCAGGAGGCCGACTTCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3469.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis