Browse Element(s) Details


OsAffx.25464.1.S1_at

Description tigr:9631.m03956
TID=OsAffx.25464.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4114011/11Transposable element protein, putative, Transposase_28
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41100OsAffx.25463.1.S1_at11/113+22800092..22801954G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os03g41110Os.49359.1.S1_at10/113+22805551..22806741expressed protein
LOC_Os03g41120Os.54188.1.S1_at10/113+22811337..22816001expressed protein
LOC_Os03g41130Os.57170.1.S1_at11/113+22818103..22818679expressed protein
LOC_Os03g41140OsAffx.25464.1.S1_at11/113+22825513..22826543Transposable element protein, putative, Transposase_28
LOC_Os03g41150OsAffx.3469.1.S1_x_at11/113+22834620..22835063hypothetical protein
LOC_Os03g41154NANA3+22837036..22837236hypothetical protein
LOC_Os03g41160OsAffx.3470.1.S1_at11/113+22839409..22840241hypothetical protein
LOC_Os03g41170Os.53434.1.S1_at11/113+22847035..22850167expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25464.1.S1_at--80--6071Chr03:22826001..22826106 (25 bp)
GAGTTCTACCTGCAGATGTTCGTCG
LOC_Os03g41140
OsAffx.25464.1.S1_at--223--3691Chr03:22825967..22825991 (25 bp)
CTTTGGTGGATCTCTTCTGTCGTAC
LOC_Os03g41140
OsAffx.25464.1.S1_at--47--9431Chr03:22825940..22825964 (25 bp)
TCGTGGTGCGACATGCCCCGAAAAG
LOC_Os03g41140
OsAffx.25464.1.S1_at--681--1511Chr03:22825908..22825932 (25 bp)
AGCAGCCTGCTGGAGCTCATAGGAT
LOC_Os03g41140
OsAffx.25464.1.S1_at--600--5911Chr03:22825896..22825920 (25 bp)
GAGCTCATAGGATGCGTCACCTTCA
LOC_Os03g41140
OsAffx.25464.1.S1_at--11--9871Chr03:22825797..22825821 (25 bp)
TACATCAGCGTAGAATCCCCACGAA
LOC_Os03g41140
OsAffx.25464.1.S1_at--699--6251Chr03:22825746..22825770 (25 bp)
GATGGGCCTGCTGTCATAGACCAAC
LOC_Os03g41140
OsAffx.25464.1.S1_at--282--4551Chr03:22825704..22825728 (25 bp)
GCGCTTGAGCCCAGTTTTTTAGTAG
LOC_Os03g41140
OsAffx.25464.1.S1_at--817--1051Chr03:22825658..22825682 (25 bp)
AGGGTCACCGCGTACATGATAGTCG
LOC_Os03g41140
OsAffx.25464.1.S1_at--509--6491Chr03:22825641..22825665 (25 bp)
GATAGTCGACGATTTCCATCGCTAG
LOC_Os03g41140
OsAffx.25464.1.S1_at--708--531Chr03:22825624..22825648 (25 bp)
ATCGCTAGAGATTGGCACCCCTGAA
LOC_Os03g41140
Target Sequence 
GAGTTCTACCTGCAGATGTTCGTCGGGCTCCTGCCTTTGGTGGATCTCTTCTGTCGTACCTTCGTGGTGCGACATGCCCC
GAAAAGCAAGATGAGCAGCCTGCTGGAGCTCATAGGATGCGTCACCTTCACCGCACGCCCTATTCAAGAATTCCTTCACA
TCCCCATGAAGGACAAGTGGGACGAGTGGCACCAGAAGTGGGTCTACATCAGCGTAGAATCCCCACGAATGCCTCATCCT
CCCTGTTGCCTCCACGATGGGCCTGCTGTCATAGACCAACGCAACACCACCCGATTGGCGCTTGAGCCCAGTTTTTTAGT
AGATCATGGAATTGGTGAAGGCCAGGGTCACCGCGTACATGATAGTCGACGATTTCCATCGCTAGAGATTGGCACCCCTG
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25464.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis