Browse Element(s) Details


Os.54188.1.S1_at

Description gb:AK102418.1
DB_XREF= gi:32987627
TID=Os.54188.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033093C21, full insert sequence.
FL= gb:AK102418.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4112010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41080Os.7752.1.S1_at11/113+22782057..22787589seed maturation protein PM23, putative, expressed
LOC_Os03g41100OsAffx.25463.1.S1_at11/113+22800092..22801954G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os03g41110Os.49359.1.S1_at10/113+22805551..22806741expressed protein
LOC_Os03g41120Os.54188.1.S1_at10/113+22811337..22816001expressed protein
LOC_Os03g41130Os.57170.1.S1_at11/113+22818103..22818679expressed protein
LOC_Os03g41140OsAffx.25464.1.S1_at11/113+22825513..22826543Transposable element protein, putative, Transposase_28
LOC_Os03g41150OsAffx.3469.1.S1_x_at11/113+22834620..22835063hypothetical protein
LOC_Os03g41154NANA3+22837036..22837236hypothetical protein
LOC_Os03g41160OsAffx.3470.1.S1_at11/113+22839409..22840241hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54188.1.S1_at--188--7071Chr03:22811911..22811935 (25 bp)
GTCAAGACTGTCGAACCGCATGGGA
LOC_Os03g41120
Os.54188.1.S1_at--331--6551Chr03:22811884..22811908 (25 bp)
GATTATGCTGAGGACGCCATACCGC
LOC_Os03g41120
Os.54188.1.S1_at--254--311Chr03:22811866..22811890 (25 bp)
ATACCGCGTCGGATGCAGCCAAAGT
LOC_Os03g41120
Os.54188.1.S1_at--625--4591Chr03:22811836..22811860 (25 bp)
GCGAAGGATTACTCTGTCCAGCTCA
LOC_Os03g41120
Os.54188.1.S1_at--402--7271Chr03:22811821..22811845 (25 bp)
GTCCAGCTCACCGAAGTGTCAAGTT
LOC_Os03g41120
Os.54188.1.S1_at--146--7091NONE
GTCAAGTTCCGATTCTGGTGAGATC
NONE
Os.54188.1.S1_at--275--5331Chr03:22811734..22811758 (25 bp)
GAAGTGCCAAATACCACCGCAGTGC
LOC_Os03g41120
Os.54188.1.S1_at--932--7371Chr03:22811516..22811540 (25 bp)
GTGAGTAACCTCAATTGATGGCTAT
LOC_Os03g41120
Os.54188.1.S1_at--467--7671Chr03:22811491..22811515 (25 bp)
GGGATTAACATTTTTTGCTCTGCTT
LOC_Os03g41120
Os.54188.1.S1_at--641--1971Chr03:22811400..22811424 (25 bp)
ACTGCTTTTCCATGGTATACTTGGC
LOC_Os03g41120
Os.54188.1.S1_at--1096--7651Chr03:22811362..22811386 (25 bp)
GGGATTTTGACATGAACCACTGTGA
LOC_Os03g41120
Target Sequence 
GTCAAGACTGTCGAACCGCATGGGAGCGATTATGCTGAGGACGCCATACCGCGTCGGATGCAGCCAAAGTGAAAAGCGAA
GGATTACTCTGTCCAGCTCACCGAAGTGTCAAGTTCCGATTCTGGTGAGATCAGCAGAGCGCATAAGAAGCAGCTACTAC
AGAAGGCAAAGGCCACCGAAGTGCCAAATACCACCGCAGTGCATAGGGAGCAGCCTGTGCAGAGAGGGAGGGGGCAGAGG
CGACGGCGAGGGCGAGGAGGAGGAAGAGGAAAAGGGAGAATCAGAGAATGTAAGTTTGTCCATGGGTAAGGAAATGCAAA
TATCATGATGAGGAGTGCAGCTCAATTTAGAGGTTGAGTATGTGAAAGTAGATTTTACAGGATTTGCTAGAGCAAGTGAG
TAACCTCAATTGATGGCTATGGGATTAACATTTTTTGCTCTGCTTAAATTTTGATCGATTTTATCTGATGTGGGTTATAG
AGCGTATCTGATGTGCTTGAGAAGAATAGTTACTGCTTTTCCATGGTATACTTGGCAACTCATGTGAAAGGGATTTTGAC
ATGAACCACTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis