Browse Element(s) Details


Os.7752.1.S1_at

Description gb:AK059397.1
DB_XREF= gi:32969415
TID=Os.7752.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-027-A10, full insert sequence.
FL= gb:AK059397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4108011/11seed maturation protein PM23, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41030NANA3+22758185..22758604hypothetical protein
LOC_Os03g41050OsAffx.25462.1.S1_at11/113+22770244..22771077hypothetical protein
LOC_Os03g41060Os.12252.1.S1_at2/113+22771904..22772258Gibberellin regulated protein
LOC_Os03g41064NANA3+22778381..22779152Metal transporter Nramp2, putative, expressed
LOC_Os03g41070NANA3+22780506..22781150Metal transporter Nramp2, putative
LOC_Os03g41080Os.7752.1.S1_at11/113+22782057..22787589seed maturation protein PM23, putative, expressed
LOC_Os03g41100OsAffx.25463.1.S1_at11/113+22800092..22801954G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os03g41110Os.49359.1.S1_at10/113+22805551..22806741expressed protein
LOC_Os03g41120Os.54188.1.S1_at10/113+22811337..22816001expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7752.1.S1_at--805--3731Chr03:22786906..22786930 (25 bp)
CTAATATCTGTTCCCCGTGATTACC
LOC_Os03g41080
Os.7752.1.S1_at--831--7391Chr03:22786922..22786946 (25 bp)
GTGATTACCTTGCACGTTTGCTATT
LOC_Os03g41080
Os.7752.1.S1_at--952--10212Chr03:22786943..22787060 (25 bp)
TATTCTGGTGCATGCTCTTGGGTCA
LOC_Os03g41080
Os.7752.1.S1_at--864--7691Chr03:22787055..22787079 (25 bp)
GGGTCACTACATCCGAGGTCTTGAG
LOC_Os03g41080
Os.7752.1.S1_at--16--5071Chr03:22787097..22787121 (25 bp)
GCAGCTTCTGAGGATATCTACCGAT
LOC_Os03g41080
Os.7752.1.S1_at--189--1351Chr03:22787124..22787148 (25 bp)
AGAGTCTTTCCCCAGTGGTGATGAT
LOC_Os03g41080
Os.7752.1.S1_at--1146--5951Chr03:22787159..22787183 (25 bp)
GAGAAAGCTTTGACCGGTTGATCGA
LOC_Os03g41080
Os.7752.1.S1_at--572--6391Chr03:22787178..22787202 (25 bp)
GATCGATGTTGTTAACCAATCCCAA
LOC_Os03g41080
Os.7752.1.S1_at--151--9791Chr03:22787268..22787292 (25 bp)
TAACCAGTAGAGCTCGGAACCCCGG
LOC_Os03g41080
Os.7752.1.S1_at--507--7351Chr03:22787531..22787555 (25 bp)
GTGAACATTACGTCCTTCTGTACTG
LOC_Os03g41080
Os.7752.1.S1_at--667--691Chr03:22787565..22787589 (25 bp)
ATGAGCCTAGCTATGCAGTCGTACT
LOC_Os03g41080
Target Sequence 
CTAATATCTGTTCCCCGTGATTACCTTGCACGTTTGCTATTCTGGTGCATGCTCTTGGGTCACTACATCCGAGGTCTTGA
GTACAGGTTAGAATTGGCGCAGCTTCTGAGGATATCTACCGATGTAGAGTCTTTCCCCAGTGGTGATGATCTTATCATTT
GAGAAAGCTTTGACCGGTTGATCGATGTTGTTAACCAATCCCAAAGGAAATGGTTTGGCTGAGAGATGGTGGAGGCGGCC
ACACTGCATTTCTCCTCAGAAAGATGCTCTAACCAGTAGAGCTCGGAACCCCGGCAGGTCTTGTAAAGTCAGGCAAACAG
CTATTCGGGTGTAAAGTTAGTGTTATATATTGATGCGAATAATCACTCTTTTCTTCTTTTATTTTATACTGTGAAATATG
AAAGGAACTTGGTTGCTCTTATTGTTAATCATATGATAGATCTGTGGATAGGCATCTTTGTATTCTAGTTTGTATGTATT
TGGTGATGTGTTCCAGCTTAGTGCTNNTANATTTTTGAGCCTCGAGTTTGNCGTGAACATTACGTCCTTCTGTACTGTTT
TGATGGATGAGCCTAGCTATGCAGTCGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis