Browse Element(s) Details


Os.12252.1.S1_at

Description gb:AK070268.1
DB_XREF= gi:32980292
TID=Os.12252.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023044E14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044E14, full insert sequence.
FL= gb:AK070268.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g410602/11Gibberellin regulated protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41000OsAffx.19542.3.S1_x_at7/113+22741492..22748552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41000OsAffx.9949.1.S1_at1/113+22741492..22748552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41010OsAffx.3468.1.S1_at11/113+22751813..22752474hypothetical protein
LOC_Os03g41010OsAffx.10222.1.S1_x_at2/113+22751813..22752474hypothetical protein
LOC_Os03g41010Os.45902.1.A1_x_at1/113+22751813..22752474hypothetical protein
LOC_Os03g41019NANA3+22755748..22756213hypothetical protein
LOC_Os03g41030NANA3+22758185..22758604hypothetical protein
LOC_Os03g41050OsAffx.25462.1.S1_at11/113+22770244..22771077hypothetical protein
LOC_Os03g41060Os.12252.1.S1_at2/113+22771904..22772258Gibberellin regulated protein
LOC_Os03g41064NANA3+22778381..22779152Metal transporter Nramp2, putative, expressed
LOC_Os03g41070NANA3+22780506..22781150Metal transporter Nramp2, putative
LOC_Os03g41080Os.7752.1.S1_at11/113+22782057..22787589seed maturation protein PM23, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0009741biological_processresponse to brassinosteroid stimulus
GO:0009826biological_processunidimensional cell growth
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12252.1.S1_at--842--3831Chr03:22772082..22772176 (25 bp)
CTGCTTCAGGGTTCTGCGGGAGCAA
LOC_Os03g41060
Os.12252.1.S1_at--287--9151Chr03:22771990..22772014 (25 bp)
TGCGAGGAGTGCAACTGCGTGCCCA
LOC_Os03g41060
Os.12252.1.S1_at--800--2051Chr03:22771841..22771865 (25 bp)
ACTTCATCTCATTTTCTTGTACTTG
NONE
Os.12252.1.S1_at--552--6631Chr03:22771796..22771820 (25 bp)
GTTGTGTATACGTCGCAGGTGTGTA
NONE
Os.12252.1.S1_at--141--4651Chr03:22771752..22771776 (25 bp)
GCGTATGTTGTCATGCTGCGTAGTT
NONE
Os.12252.1.S1_at--895--1211Chr03:22771725..22771749 (25 bp)
AGTTAGTAGTCCTACCTACTCCAGT
NONE
Os.12252.1.S1_at--883--1171Chr03:22771703..22771727 (25 bp)
AGTACGTACGTGTTGATGCCTGTTA
NONE
Os.12252.1.S1_at--1132--851Chr03:22771676..22771700 (25 bp)
ATGGCTGTATGGCTAGCTAAGCTGT
NONE
Os.12252.1.S1_at--618--3891Chr03:22771655..22771679 (25 bp)
CTGTGTGCCTGTGTCGATTTGTAAA
NONE
Os.12252.1.S1_at--457--1651Chr03:22771600..22771624 (25 bp)
AGCGCACGTACTGTTTGTTTGTCTG
NONE
Os.12252.1.S1_at--940--6491Chr03:22771544..22771568 (25 bp)
GATATGCCGTATGCGCTTTACCTGA
NONE
Target Sequence 
CTGCTTCAGGGTTCTGCGGGAGCAAGTGCGCGGTGCGGTGCGGGANGGGGAGGGGGCGGGGGAGCGGGTGCCTGAGGTCG
TGCGGGCTGTGCTGCGAGGAGTGCAACTGCGTGCCCACGGGGAGTGGGTCGACGCGCGACGAGTGCCCCTGCTACCNGCG
ACATGCTCACCGCCGGCCCCAGGAAGAGGCCCAAGTGCCCCTGAATCCTCCCCATCCATCTCCATCTCATCGATTACCAT
CAACTTCATCTCATTTTCTTGTACTTGAAATTAGCTACTAGTACGTGGTTGTGTATACGTCGCAGGTGTGTATGTATGTA
TGTATATATATGCGTATGTTGTCATGCTGCGTAGTTATAGTTAGTAGTCCTACCTACTCCAGTACGTACGTGTTGATGCC
TGTTAATATGGCTGTATGGCTAGCTAAGCTGTGTGCCTGTGTCGATTTGTAAAGTTGTACTAGTAGGTAGTTGTACTACT
TGCAGCGCACGTACTGTTTGTTTGTCTGTTGTTAAATTTCGTGTTAACTATGAACAGGGGATATGCCGTATGCGCTTTAC
CTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis