Browse Element(s) Details


OsAffx.3468.1.S1_at

Description tigr:9631.m03943
TID=OsAffx.3468.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4101011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40970NANA3+22723096..22729061retrotransposon protein, putative, unclassified
LOC_Os03g40980OsAffx.20257.1.S1_at1/113+22729713..22730039retrotransposon protein, putative, unclassified
LOC_Os03g40980Os.47130.4.A1_x_at1/113+22729713..22730039retrotransposon protein, putative, unclassified
LOC_Os03g40980Os.37083.2.S1_at1/113+22729713..22730039retrotransposon protein, putative, unclassified
LOC_Os03g41000OsAffx.19542.3.S1_x_at7/113+22741492..22748552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41000OsAffx.9949.1.S1_at1/113+22741492..22748552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41010OsAffx.3468.1.S1_at11/113+22751813..22752474hypothetical protein
LOC_Os03g41010OsAffx.10222.1.S1_x_at2/113+22751813..22752474hypothetical protein
LOC_Os03g41010Os.45902.1.A1_x_at1/113+22751813..22752474hypothetical protein
LOC_Os03g41019NANA3+22755748..22756213hypothetical protein
LOC_Os03g41030NANA3+22758185..22758604hypothetical protein
LOC_Os03g41050OsAffx.25462.1.S1_at11/113+22770244..22771077hypothetical protein
LOC_Os03g41060Os.12252.1.S1_at2/113+22771904..22772258Gibberellin regulated protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3468.1.S1_at--405--2951Chr03:22752420..22752444 (25 bp)
AATGGAGACTGCCTGTATGCATGCA
LOC_Os03g41010
OsAffx.3468.1.S1_at--987--5711Chr03:22752414..22752438 (25 bp)
GACTGCCTGTATGCATGCAGTGAGC
LOC_Os03g41010
OsAffx.3468.1.S1_at--194--8591Chr03:22752389..22752413 (25 bp)
TGGTCCCTGGGATAATGATGCCTGA
LOC_Os03g41010
OsAffx.3468.1.S1_at--228--4271Chr03:22752384..22752408 (25 bp)
CCTGGGATAATGATGCCTGAAACTA
LOC_Os03g41010
OsAffx.3468.1.S1_at--504--8851Chr03:22752374..22752398 (25 bp)
TGATGCCTGAAACTATTGAGGCCAT
LOC_Os03g41010
OsAffx.3468.1.S1_at--502--10211Chr03:22752361..22752385 (25 bp)
TATTGAGGCCATAGCGATCCAGCGT
LOC_Os03g41010
OsAffx.3468.1.S1_at--284--891Chr03:22752356..22752380 (25 bp)
AGGCCATAGCGATCCAGCGTGCCCT
LOC_Os03g41010
OsAffx.3468.1.S1_at--850--1631Chr03:22752341..22752365 (25 bp)
AGCGTGCCCTTTCCATTGATTGGGA
LOC_Os03g41010
OsAffx.3468.1.S1_at--1071--9151Chr03:22752337..22752361 (25 bp)
TGCCCTTTCCATTGATTGGGAAGAT
LOC_Os03g41010
OsAffx.3468.1.S1_at--112--6311Chr03:22751863..22752339 (25 bp)
GATGATGGCCAGCAGGTGACTCAAT
LOC_Os03g41010
OsAffx.3468.1.S1_at--975--8871Chr03:22751861..22752337 (25 bp)
TGATGGCCAGCAGGTGACTCAATGT
LOC_Os03g41010
Target Sequence 
AATGGAGACTGCCTGTATGCATGCAGTGAGCTGGTCCCTGGGATAATGATGCCTGAAACTATTGAGGCCATAGCGATCCA
GCGTGCCCTTTCCATTGATTGGGAAGATGATGGCCAGCAGGTGACTCAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis