Browse Element(s) Details


OsAffx.25462.1.S1_at

Description tigr:9631.m03947
TID=OsAffx.25462.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4105011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41000OsAffx.19542.3.S1_x_at7/113+22741492..22748552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41000OsAffx.9949.1.S1_at1/113+22741492..22748552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41010OsAffx.3468.1.S1_at11/113+22751813..22752474hypothetical protein
LOC_Os03g41010OsAffx.10222.1.S1_x_at2/113+22751813..22752474hypothetical protein
LOC_Os03g41010Os.45902.1.A1_x_at1/113+22751813..22752474hypothetical protein
LOC_Os03g41019NANA3+22755748..22756213hypothetical protein
LOC_Os03g41030NANA3+22758185..22758604hypothetical protein
LOC_Os03g41050OsAffx.25462.1.S1_at11/113+22770244..22771077hypothetical protein
LOC_Os03g41060Os.12252.1.S1_at2/113+22771904..22772258Gibberellin regulated protein
LOC_Os03g41064NANA3+22778381..22779152Metal transporter Nramp2, putative, expressed
LOC_Os03g41070NANA3+22780506..22781150Metal transporter Nramp2, putative
LOC_Os03g41080Os.7752.1.S1_at11/113+22782057..22787589seed maturation protein PM23, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25462.1.S1_at--364--9211Chr03:22771022..22771046 (25 bp)
TCCACCAGATCTGCGCGAAAGGGAA
LOC_Os03g41050
OsAffx.25462.1.S1_at--684--6231Chr03:22770915..22770939 (25 bp)
GATGGCGGGCTTTCCTTTGCCAGAT
LOC_Os03g41050
OsAffx.25462.1.S1_at--317--10291Chr03:22770905..22770929 (25 bp)
TTTCCTTTGCCAGATCCAACGAGAG
LOC_Os03g41050
OsAffx.25462.1.S1_at--1024--9231Chr03:22770903..22770927 (25 bp)
TCCTTTGCCAGATCCAACGAGAGAG
LOC_Os03g41050
OsAffx.25462.1.S1_at--648--10291Chr03:22770900..22770924 (25 bp)
TTTGCCAGATCCAACGAGAGAGGAG
LOC_Os03g41050
OsAffx.25462.1.S1_at--888--971Chr03:22770880..22770904 (25 bp)
AGGAGCAGTGGTAGCACCGACGCTC
LOC_Os03g41050
OsAffx.25462.1.S1_at--496--1531Chr03:22770877..22770901 (25 bp)
AGCAGTGGTAGCACCGACGCTCTTC
LOC_Os03g41050
OsAffx.25462.1.S1_at--533--3811Chr03:22770851..22770875 (25 bp)
CTCCACCAGATTCGGCAAGCGGGAA
LOC_Os03g41050
OsAffx.25462.1.S1_at--12--1731Chr03:22770847..22770871 (25 bp)
ACCAGATTCGGCAAGCGGGAAGGCC
LOC_Os03g41050
OsAffx.25462.1.S1_at--718--4652Chr06:7514533..7514555 (23 bp)
GCGGGTTAGCCGAGGCCCAACAAAT
NONE
OsAffx.25462.1.S1_at--390--10459Chr10:6659445..6659464 (20 bp)
TTAGCCGAGGCCCAACAAATTAAGG
NONE
Target Sequence 
TCCACCAGATCTGCGCGAAAGGGAAGGTGGTGGGAGGGGATGCAGTGGCCTCCGTGATGACGGCGGCGGATCAGGCGGAG
GCAATGGCATCGGCGGCTTCCACTGGCGATGGCGGGCTTTCCTTTGCCAGATCCAACGAGAGAGGAGCAGTGGTAGCACC
GACGCTCTTCCCTCCACCAGATTCGGCAAGCGGGAAGGCCGCGGGCTCCCCTCCTCCAGATCTGGTCAGGGGAGGCGGCG
GGTTAGCCGAGGCCCAACAAATTAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis