Browse Element(s) Details


OsAffx.20257.1.S1_at

Description tigr:9638.m02888
TID=OsAffx.20257.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g409801/11retrotransposon protein, putative, unclassified
LOC_Os03g595201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g139201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g436301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40950OsAffx.13277.1.S1_at11/113+22713060..22713704hypothetical protein
LOC_Os03g40960Os.28943.1.S1_x_at4/113+22721344..22722477retrotransposon protein, putative, unclassified
LOC_Os03g40970NANA3+22723096..22729061retrotransposon protein, putative, unclassified
LOC_Os03g40980OsAffx.20257.1.S1_at1/113+22729713..22730039retrotransposon protein, putative, unclassified
LOC_Os03g40980Os.47130.4.A1_x_at1/113+22729713..22730039retrotransposon protein, putative, unclassified
LOC_Os03g40980Os.37083.2.S1_at1/113+22729713..22730039retrotransposon protein, putative, unclassified
LOC_Os03g41000OsAffx.19542.3.S1_x_at7/113+22741492..22748552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41000OsAffx.9949.1.S1_at1/113+22741492..22748552retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41010OsAffx.3468.1.S1_at11/113+22751813..22752474hypothetical protein
LOC_Os03g41010OsAffx.10222.1.S1_x_at2/113+22751813..22752474hypothetical protein
LOC_Os03g41010Os.45902.1.A1_x_at1/113+22751813..22752474hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20257.1.S1_at--51--71165Chr12:8962264..8962284 (21 bp)
GTCAGACCAGTCACAAACCGGAGAG
NONE
OsAffx.20257.1.S1_at--76--5171Chr10:17009736..17009760 (25 bp)
GCAACCGCGCCTTGCCGTTGCGAAA
NONE
OsAffx.20257.1.S1_at--548--10651Chr10:17009719..17009743 (25 bp)
TTGCGAAACGGCTTCGACCGCTGGT
NONE
OsAffx.20257.1.S1_at--517--2691Chr10:17009686..17009710 (25 bp)
AAGCTGTTGCTCATGTATTTGTAGA
NONE
OsAffx.20257.1.S1_at--456--211Chr10:17009670..17009694 (25 bp)
ATTTGTAGACAAGGAGACCATTGGC
NONE
OsAffx.20257.1.S1_at--217--1391Chr10:17009660..17009680 (21 bp)
AGACCATTGGCAAGCCTGACGGGAC
NONE
OsAffx.20257.1.S1_at--648--2651Chr10:17009567..17009669 (25 bp)
AAGCCTGACGGGACGGTGGTTGCCA
NONE
OsAffx.20257.1.S1_at--576--8791Chr10:17009524..17009548 (25 bp)
TGTTCGACTCGAAAGCGCGGCTTGA
NONE
OsAffx.20257.1.S1_at--1119--5551Chr10:17009408..17009538 (25 bp)
GAAAGCGCGGCTTGAGGCCCTCCTC
NONE
OsAffx.20257.1.S1_at--372--5691Chr10:17009383..17009407 (25 bp)
GACTTCCACTTCAATGTCCGGGAGG
NONE
OsAffx.20257.1.S1_at--644--9211Chr10:17009379..17009403 (25 bp)
TCCACTTCAATGTCCGGGAGGTCAA
NONE
Target Sequence 
GTCAGACCAGTCACAAACCGGAGAGACGAAAGTGCTATCTTTGATCTCGCCGAGCACGAATTCGAGGTGGAAGGCTATCC
TGTTGTCGACTACGAGTCAGATCGTCAGACCGCCATGCAACCGCGCCTTGCCGTTGCGAAACGGCTTCGACCGCTGGTGG
ACGAGGAAGCTGTTGCTCATGTATTTGTAGACAAGGAGACCATTGGCAAGCCTGACGGGACGGTGGTTGCCACTGTCGCC
GACGCCGCGATGTTCGACTCGAAAGCGCGGCTTGAGGCCCTCCTCGACTTCCACTTCAATGTCCGGGAGGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20257.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis