Browse Element(s) Details


OsAffx.13277.1.S1_at

Description tigr:9631.m03937
TID=OsAffx.13277.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4095011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40900NANA3+22691305..22691808hypothetical protein
LOC_Os03g40910OsAffx.26001.2.S1_at1/113+22692358..22693179hypothetical protein
LOC_Os03g40920Os.1151.2.S2_a_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.2.S1_a_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.2.S1_at11/113+22693876..22697964expressed protein
LOC_Os03g40920OsAffx.3466.1.S1_s_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.2.S2_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.1.S1_a_at11/113+22693876..22697964expressed protein
LOC_Os03g40920OsAffx.3466.1.S1_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.1.S1_at10/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.1.S1_x_at10/113+22693876..22697964expressed protein
LOC_Os03g40930OsAffx.13276.1.S1_at11/113+22699652..22701524Lipase, putative, expressed
LOC_Os03g40950OsAffx.13277.1.S1_at11/113+22713060..22713704hypothetical protein
LOC_Os03g40960Os.28943.1.S1_x_at4/113+22721344..22722477retrotransposon protein, putative, unclassified
LOC_Os03g40970NANA3+22723096..22729061retrotransposon protein, putative, unclassified
LOC_Os03g40980OsAffx.20257.1.S1_at1/113+22729713..22730039retrotransposon protein, putative, unclassified
LOC_Os03g40980Os.47130.4.A1_x_at1/113+22729713..22730039retrotransposon protein, putative, unclassified
LOC_Os03g40980Os.37083.2.S1_at1/113+22729713..22730039retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13277.1.S1_at--493--7571Chr03:22713103..22713127 (25 bp)
GGGCGACTAGCGATAACTGTAATGA
LOC_Os03g40950
OsAffx.13277.1.S1_at--94--9811Chr03:22713116..22713140 (25 bp)
TAACTGTAATGAGTACGACGACTGC
LOC_Os03g40950
OsAffx.13277.1.S1_at--730--6991Chr03:22713128..22713152 (25 bp)
GTACGACGACTGCTACAACGACTAC
LOC_Os03g40950
OsAffx.13277.1.S1_at--274--3251Chr03:22713143..22713167 (25 bp)
CAACGACTACGGTTGTAGCGAGCAC
LOC_Os03g40950
OsAffx.13277.1.S1_at--86--4111Chr03:22713146..22713170 (25 bp)
CGACTACGGTTGTAGCGAGCACGGT
LOC_Os03g40950
OsAffx.13277.1.S1_at--527--9931Chr03:22713150..22713174 (25 bp)
TACGGTTGTAGCGAGCACGGTGGTG
LOC_Os03g40950
OsAffx.13277.1.S1_at--996--4071Chr03:22713182..22713206 (25 bp)
CGACGACTACGGTGATGGAGGTGTT
LOC_Os03g40950
OsAffx.13277.1.S1_at--919--6131Chr03:22713199..22713223 (25 bp)
GAGGTGTTGACGTTGGCATAGTCCA
LOC_Os03g40950
OsAffx.13277.1.S1_at--455--5771Chr03:22713207..22713231 (25 bp)
GACGTTGGCATAGTCCAAGGAGTTC
LOC_Os03g40950
OsAffx.13277.1.S1_at--551--10871Chr03:22713211..22713235 (25 bp)
TTGGCATAGTCCAAGGAGTTCCTCA
LOC_Os03g40950
OsAffx.13277.1.S1_at--503--3211Chr03:22713222..22713246 (25 bp)
CAAGGAGTTCCTCAAAACCGTCAAG
LOC_Os03g40950
Target Sequence 
GGGCGACTAGCGATAACTGTAATGAGTACGACGACTGCTACAACGACTACGGTTGTAGCGAGCACGGTGGTGGCAACAAC
GACGACTACGGTGATGGAGGTGTTGACGTTGGCATAGTCCAAGGAGTTCCTCAAAACCGTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13277.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis