Browse Element(s) Details


Os.1151.2.S2_at

Description gb:AK072384.1
DB_XREF= gi:32982407
TID=Os.1151.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1151 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for mitochondrial ATP synthase 6 KD subunit, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078E13, full insert sequence.
FL= gb:AK107928.1 gb:AK072384.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4092011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40860OsAffx.25460.1.S1_at11/113+22676530..22676787hypothetical protein
LOC_Os03g40870OsAffx.22722.1.S1_x_at1/113+22677622..22684053retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g40880OsAffx.20354.1.S1_at5/113+22685239..22687576retrotransposon protein, putative, unclassified
LOC_Os03g40900NANA3+22691305..22691808hypothetical protein
LOC_Os03g40910OsAffx.26001.2.S1_at1/113+22692358..22693179hypothetical protein
LOC_Os03g40920Os.1151.2.S2_a_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.2.S1_a_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.2.S1_at11/113+22693876..22697964expressed protein
LOC_Os03g40920OsAffx.3466.1.S1_s_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.2.S2_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.1.S1_a_at11/113+22693876..22697964expressed protein
LOC_Os03g40920OsAffx.3466.1.S1_at11/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.1.S1_at10/113+22693876..22697964expressed protein
LOC_Os03g40920Os.1151.1.S1_x_at10/113+22693876..22697964expressed protein
LOC_Os03g40930OsAffx.13276.1.S1_at11/113+22699652..22701524Lipase, putative, expressed
LOC_Os03g40950OsAffx.13277.1.S1_at11/113+22713060..22713704hypothetical protein
LOC_Os03g40960Os.28943.1.S1_x_at4/113+22721344..22722477retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1151.2.S2_at--664--6051Chr03:22697396..22697420 (25 bp)
GAGTTCCTAATTTCAGGTATCCTGT
LOC_Os03g40920
Os.1151.2.S2_at--192--3671Chr03:22697436..22697460 (25 bp)
CTTTGCTTAACCTTACCATATCTGC
LOC_Os03g40920
Os.1151.2.S2_at--569--931Chr03:22697746..22697770 (25 bp)
AGGCACGACATAGTTTCTTGGGCAA
LOC_Os03g40920
Os.1151.2.S2_at--329--9571Chr03:22697761..22697785 (25 bp)
TCTTGGGCAAGACATTTGGTTCATT
LOC_Os03g40920
Os.1151.2.S2_at--912--7891Chr03:22697778..22697802 (25 bp)
GGTTCATTGCTGTAACTTCCGCACA
LOC_Os03g40920
Os.1151.2.S2_at--104--5131Chr03:22697798..22697822 (25 bp)
GCACACTTGTCTTAGGCACGTTTCT
LOC_Os03g40920
Os.1151.2.S2_at--1005--8231Chr03:22697812..22697836 (25 bp)
GGCACGTTTCTTTTGCCAAACTTTG
LOC_Os03g40920
Os.1151.2.S2_at--55--7051Chr03:22697852..22697876 (25 bp)
GTAAATTGCTAGACACACCGTAGAC
LOC_Os03g40920
Os.1151.2.S2_at--67--231Chr03:22697880..22697904 (25 bp)
ATTTGGCCGAGAAGTGTCGTGTCGA
LOC_Os03g40920
Os.1151.2.S2_at--398--8991Chr03:22697907..22697931 (25 bp)
TGAACCAAATCTGCCCGTAAAACTT
LOC_Os03g40920
Os.1151.2.S2_at--874--2391Chr03:22697926..22697950 (25 bp)
AAACTTGCAGCGTTTGTTCCATTCC
LOC_Os03g40920
Target Sequence 
GAGTTCCTAATTTCAGGTATCCTGTTTATGGAAGTACTTACTTTGCTTAACCTTACCATATCTGCAGGTGAAGGAACAGC
TGGNTATTGCCNNAAGTCTTNCAGTTTGGNCCTATTTTTNCTGTTNCCAAATGAACCTACCTGTTTTTTGTTTATNCCNN
NTNNGGGTGGACAACCGCTNCNAGTTGTATCTAANNAAGAGGCGTTTGAATCTTTGGACCAAAAAATTTGAGCTTCTGGT
ATAAACCTGTAATACTCTTCAAGNNGCCNTCCTGCTTCCTGATTTATTTTTTGTAAAAGCTTGTATCGATGGTAAGTATA
CATCGAAAGGGCTTTCCTGGCTGGTTGCCAAACGTTGGGCTTAGGCACGACATAGTTTCTTGGGCAAGACATTTGGTTCA
TTGCTGTAACTTCCGCACACTTGTCTTAGGCACGTTTCTTTTGCCAAACTTTGTCTAAGGTGAGGCGAGTAAATTGCTAG
ACACACCGTAGACAAGATTTGGCCGAGAAGTGTCGTGTCGAAATGAACCAAATCTGCCCGTAAAACTTGCAGCGTTTGTT
CCATTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1151.2.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis