Browse Element(s) Details


OsAffx.25463.1.S1_at

Description tigr:9631.m03952
TID=OsAffx.25463.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative A-type cyclin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4110011/11G2/mitotic-specific cyclin C13-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41064NANA3+22778381..22779152Metal transporter Nramp2, putative, expressed
LOC_Os03g41070NANA3+22780506..22781150Metal transporter Nramp2, putative
LOC_Os03g41080Os.7752.1.S1_at11/113+22782057..22787589seed maturation protein PM23, putative, expressed
LOC_Os03g41100OsAffx.25463.1.S1_at11/113+22800092..22801954G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os03g41110Os.49359.1.S1_at10/113+22805551..22806741expressed protein
LOC_Os03g41120Os.54188.1.S1_at10/113+22811337..22816001expressed protein
LOC_Os03g41130Os.57170.1.S1_at11/113+22818103..22818679expressed protein
LOC_Os03g41140OsAffx.25464.1.S1_at11/113+22825513..22826543Transposable element protein, putative, Transposase_28

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25463.1.S1_at--970--6151Chr03:22800942..22800966 (25 bp)
GAGGATTTCTGCTATATAACCGACA
LOC_Os03g41100
OsAffx.25463.1.S1_at--333--7611Chr03:22801157..22801181 (25 bp)
GGGCAATCCTACAACCAAGACGTTC
LOC_Os03g41100
OsAffx.25463.1.S1_at--88--6171Chr03:22801284..22801307 (24 bp)
GAGGATGTTCATCAGATCTAGCCAA
LOC_Os03g41100
OsAffx.25463.1.S1_at--482--1391Chr03:22801310..22801440 (25 bp)
AGACGATAAGTATCCTAGCCTTCCC
LOC_Os03g41100
OsAffx.25463.1.S1_at--346--10651Chr03:22801436..22801460 (25 bp)
TTCCCTTGGAGTTCATGTGTAGCTA
LOC_Os03g41100
OsAffx.25463.1.S1_at--725--8671Chr03:22801451..22801475 (25 bp)
TGTGTAGCTATCTTGCCGAGCTGAG
LOC_Os03g41100
OsAffx.25463.1.S1_at--770--6071Chr03:22801483..22801507 (25 bp)
GAGTACGGCTGTGTTCGGCTCTTGC
LOC_Os03g41100
OsAffx.25463.1.S1_at--827--551Chr03:22801509..22801533 (25 bp)
ATCCGTTGTTGCAGCCTCAGTGGTG
LOC_Os03g41100
OsAffx.25463.1.S1_at--615--7731Chr03:22801530..22801554 (25 bp)
GGTGTTTGTTGCAAGGCTAACCCTT
LOC_Os03g41100
OsAffx.25463.1.S1_at--97--4851Chr03:22801545..22801569 (25 bp)
GCTAACCCTTGATTCAGACACCAAT
LOC_Os03g41100
OsAffx.25463.1.S1_at--11--1072Chr03:22801751..22801775 (25 bp)
AGGGTCATCTCTAATGGCTATCCGG
LOC_Os03g41100
Target Sequence 
GAGGATTTCTGCTATATAACCGACAATACCTATATGAAACAGGAGGTTGTCAAGATGGAGCGCGATATACTGAATGTTCT
CAAGTTTGAGATGGGCAATCCTACAACCAAGACGTTCCTGAGGATGTTCATCAGATCTAGCCAAGAAGACGATAAGTATC
CTAGCCTTCCCTTGGAGTTCATGTGTAGCTATCTTGCCGAGCTGAGCCTGCTGGAGTACGGCTGTGTTCGGCTCTTGCCA
TCCGTTGTTGCAGCCTCAGTGGTGTTTGTTGCAAGGCTAACCCTTGATTCAGACACCAATCCTTGGAGCAAGAAGTTGCA
AGAGGTGACCGGCTACAGGGCATCTGAGTTGAAGGATTGCATTACCTGCATACATGACTTGCAGCTAAACAGGAAAGGGT
CATCTCTAATGGCTATCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis