Browse Element(s) Details


OsAffx.17654.3.S1_x_at

Description tigr:9639.m04329
TID=OsAffx.17654.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1192011/11transposon protein, putative, unclassified
LOC_Os05g107609/11transposon protein, putative, unclassified, expressed
LOC_Os02g018601/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g11890Os.53891.1.S1_at10/119+6672037..6677975expressed protein
LOC_Os09g11900Os.43203.1.S1_x_at10/119+6686847..6690306expressed protein
LOC_Os09g11910OsAffx.9815.1.S1_at9/119+6693217..6697761transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g11920OsAffx.17654.3.S1_x_at11/119+6702072..6704049transposon protein, putative, unclassified
LOC_Os09g11920OsAffx.17654.2.S1_at8/119+6702072..6704049transposon protein, putative, unclassified
LOC_Os09g11930Os.51841.1.S1_x_at1/119+6708215..6709112hypothetical protein
LOC_Os09g11930OsAffx.3469.1.S1_x_at1/119+6708215..6709112hypothetical protein
LOC_Os09g11940OsAffx.1646.1.S1_x_at1/119+6720117..6725646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g11940OsAffx.22368.1.S1_x_at1/119+6720117..6725646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g11950NANA9+6726667..6729490retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17654.3.S1_x_at--827--5212Chr09:6703071..6703095 (25 bp)
GAATTCAGTTCTTGCATGTATGACC
LOC_Os09g11920
OsAffx.17654.3.S1_x_at--102--6292Chr09:6703215..6703239 (25 bp)
GATGTTTTTACATTGGGCATGCGAA
LOC_Os09g11920
OsAffx.17654.3.S1_x_at--556--7593Chr09:6703229..6703253 (25 bp)
GGGCATGCGAAGCACACAATTAAGT
LOC_Os09g11920
OsAffx.17654.3.S1_x_at--444--7392Chr09:6703252..6703276 (25 bp)
GTGAGAGCCTGAACAATGACCTGAA
LOC_Os09g11920
OsAffx.17654.3.S1_x_at--1150--2792Chr09:6703401..6703425 (25 bp)
AAGATGAGGTCACCCATGTTGCTCC
LOC_Os09g11920
OsAffx.17654.3.S1_x_at--616--9672Chr09:6703410..6703432 (23 bp)
TCACCCATGTTGCTCCAAGCAAGAT
LOC_Os09g11920
OsAffx.17654.3.S1_x_at--133--6051Chr09:6703481..6703505 (25 bp)
GAGATCTACTGTGGCATGCACTAAT
LOC_Os09g11920
OsAffx.17654.3.S1_x_at--964--5471Chr09:6703517..6703541 (25 bp)
GAACTACCAGTTCACAGTAGCAATT
LOC_Os09g11920
OsAffx.17654.3.S1_x_at--12--6812Chr09:6703584..6703608 (25 bp)
GTTATTGGCAATATTTCTACAGAGA
LOC_Os09g11920
OsAffx.17654.3.S1_x_at--1119--10312Chr09:6703597..6703621 (25 bp)
TTTCTACAGAGACAGCTTCATGCAG
LOC_Os09g11920
OsAffx.17654.3.S1_x_at--83--4912Chr09:6703611..6703635 (25 bp)
GCTTCATGCAGCTGTGGTCAGTTTG
LOC_Os09g11920
Target Sequence 
GAATTCAGTTCTTGCATGTATGACCATGATGATAAAGTGAAGTTTGAAGAAGCTTTTGATGCTATGAGAAAGAAAGTACA
AAAACAAACATGGCTTGATAGTATATATAAAGTAAGGGAGAAGTGGGCAGAATGCTACATGAGAGATGTTTTTACATTGG
GCATGCGAAGCACACAATTAAGTGAGAGCCTGAACAATGACCTGAAAATTCACTTGAAATCGAATCTTGATATTATTCGA
TTTTTCAATCATTTTGAAAGGGTTGTGAAAGGCAAGAGGGACAATGAACTGAAATCAGAATATGAATCCAGGGAAAAACT
ACCTAGAATCAAGATGAGGTCACCCATGTTGCTCCAAGCAAGATATGAGAGATCTACTGTGGCATGCACTAATGTATTAG
ATGGGAACTACCAGTTCACAGTAGCAATTGGTATTCTTTCTGATGATCCAATATTTGAAGAGGAATACAATGTTATTGGC
AATATTTCTACAGAGACAGCTTCATGCAGCTGTGGTCAGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17654.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis