Browse Element(s) Details


OsAffx.22368.1.S1_x_at

Description gb:NM_187099.1
DB_XREF= gi:34901283
TID=OsAffx.22368.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GENSCAN etc. (OJ1047_A06.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g151201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g168401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g230701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g119401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g282901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g096901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g217801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g149901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g287801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g229801/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15100NANA9+9151782..9153213retrotransposon protein, putative, unclassified
LOC_Os09g15110OsAffx.17708.1.S1_at11/119+9156289..9157671hypothetical protein
LOC_Os09g15120OsAffx.22368.1.S1_x_at1/119+9175901..9178868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15120OsAffx.1646.1.S1_x_at1/119+9175901..9178868retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15130OsAffx.22722.1.S1_at2/119+9179360..9181566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15130OsAffx.22722.1.S1_x_at1/119+9179360..9181566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15140OsAffx.20628.1.S1_at5/119+9182378..9185302retrotransposon protein, putative, unclassified
LOC_Os09g15140OsAffx.10496.1.S1_at1/119+9182378..9185302retrotransposon protein, putative, unclassified
LOC_Os09g15140OsAffx.15396.1.S1_x_at1/119+9182378..9185302retrotransposon protein, putative, unclassified
LOC_Os09g15150NANA9+9197451..9197767hypothetical protein
LOC_Os09g15160NANA9+9201209..9203452retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22368.1.S1_x_at--734--8531Chr07:15435016..15435040 (25 bp)
TGGAGCAGCACAGCGAGTACGGGCA
NONE
OsAffx.22368.1.S1_x_at--98--3431Chr07:15435151..15435175 (25 bp)
CAGAGCGAGCAACTGTGGCGGCGCC
NONE
OsAffx.22368.1.S1_x_at--24--8411Chr07:15435170..15435194 (25 bp)
GGCGCCGGAGCAAGCTGCGGTGCAC
NONE
OsAffx.22368.1.S1_x_at--620--1491Chr07:15435216..15435240 (25 bp)
AGCAACTGCGGCATCGGCGGAGCAA
NONE
OsAffx.22368.1.S1_x_at--705--59511Chr12:12987917..12987981 (24 bp)
GAGCAAGCTGCAGCGTGAGCAACAG
LOC_Os12g22980
OsAffx.22368.1.S1_x_at--433--8091Chr07:15435285..15435309 (25 bp)
GGAGCGAGCAACAGCGAGGGCGGCG
NONE
OsAffx.22368.1.S1_x_at--873--8351Chr07:15435309..15435333 (25 bp)
GGCGGAGCGAGCATCTGCGGCGGCG
NONE
OsAffx.22368.1.S1_x_at--1109--5731Chr07:15435424..15435448 (25 bp)
GACGGCGGAGCAAGCAACTACGGTG
NONE
OsAffx.22368.1.S1_x_at--419--1491Chr07:15435436..15435460 (25 bp)
AGCAACTACGGTGGCGGAGCAGCAA
NONE
OsAffx.22368.1.S1_x_at--1146--5931Chr07:15435452..15435476 (25 bp)
GAGCAGCAAGCTGTGCGCGCGGCGG
NONE
OsAffx.22368.1.S1_x_at--1078--8331Chr07:15435475..15435499 (25 bp)
GGCGGGAACGGTGACGGAGCAAGCA
NONE
Target Sequence 
TGGAGCAGCACAGCGAGTACGGGCAGGAGAAGCGGGGACGGCGACGCGAGTAGCAGCGGGCGGCGGCAGCGAGGGCGGCG
GCGGGAGAGCAAGCTGCAGCATGAGCAGCAGCAGCAGGAGCGACGGGGACGGCGGCAGAGCGAGCAACTGTGGCGGCGCC
GGAGCAAGCTGCGGTGCACGGCGGTGGGGACGGCGGCGCGAGCAACTGCGGCATCGGCGGAGCAAGCTGCAGCGTGAGCA
ACAGCAGGAGGAGCGGCGGGGACGGCGGGGGAGCGAGCAACAGCGAGGGCGGCGGCGGAGCGAGCATCTGCGGCGGCGGC
GGAGCAAGCTGCGGTGCGTGGCGGCGGGGACGGCGGCGCGAGCAACTGCGGCGACGGCGGAGCAAGCGGCGCGCGCGGTG
GTGGGGACGACGGCGGAGCAAGCAACTACGGTGGCGGAGCAGCAAGCTGTGCGCGCGGCGGCGGGAACGGTGACGGAGCA
AGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22368.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis