Browse Element(s) Details


OsAffx.15396.1.S1_x_at

Description tigr:9634.m01269
TID=OsAffx.15396.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1281011/11expressed protein
LOC_Os09g151401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12780Os.24795.1.S1_at11/116+6979037..6985314DegP protease, putative, expressed
LOC_Os06g12790Os.4079.1.S1_a_at11/116+6989940..6993528RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os06g12790Os.4079.2.S1_a_at11/116+6989940..6993528RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os06g12800OsAffx.27591.1.S1_x_at11/116+6994344..6995672expressed protein
LOC_Os06g12800OsAffx.27591.1.S1_at11/116+6994344..6995672expressed protein
LOC_Os06g12810OsAffx.15396.1.S1_at11/116+6999437..7003405expressed protein
LOC_Os06g12810OsAffx.15396.1.S1_x_at11/116+6999437..7003405expressed protein
LOC_Os06g12820Os.51692.1.S1_at10/116+7004873..7007331expressed protein
LOC_Os06g12830Os.53094.1.S1_at11/116+7018835..7021062expressed protein
LOC_Os06g12840OsAffx.27593.1.S1_x_at11/116+7024604..7026003hypothetical protein
LOC_Os06g12840OsAffx.27593.1.S1_at11/116+7024604..7026003hypothetical protein
LOC_Os06g12840OsAffx.27593.2.S1_x_at2/116+7024604..7026003hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15396.1.S1_x_at--16--5151Chr06:6999999..7000023 (25 bp)
GCAACTGGTTCTTCCGCGTCAACTA
LOC_Os06g12810
OsAffx.15396.1.S1_x_at--305--1951Chr06:6999834..6999858 (25 bp)
ACGGCGACTGCAAGCGCGGCCTCGT
LOC_Os06g12810
OsAffx.15396.1.S1_x_at--928--6711Chr06:6999806..6999830 (25 bp)
GTTCGTGCGGACCTACACGCCGAGC
LOC_Os06g12810
OsAffx.15396.1.S1_x_at--757--5851Chr06:6999785..6999809 (25 bp)
GAGCCACTTCGAGCACGGCTCGTGG
LOC_Os06g12810
OsAffx.15396.1.S1_x_at--539--10631Chr06:6999760..6999784 (25 bp)
TTCGACGGCGGCTACTGCAATCGGA
LOC_Os06g12810
OsAffx.15396.1.S1_x_at--931--1971Chr06:6999747..6999771 (25 bp)
ACTGCAATCGGACGCGGCCACTGGA
LOC_Os06g12810
OsAffx.15396.1.S1_x_at--942--891Chr06:6999714..6999738 (25 bp)
AGGCGCCGAGCTGGGACCAGTCCAT
LOC_Os06g12810
OsAffx.15396.1.S1_x_at--422--9372Chr09:9184149..9184576 (25 bp)
TCGACGTGACGAAGGCGATGATGCT
LOC_Os09g15140
OsAffx.15396.1.S1_x_at--1005--3931Chr06:6999556..6999580 (25 bp)
CGGCACTACGACAAGAGGTCGGCCG
LOC_Os06g12810
OsAffx.15396.1.S1_x_at--151--8411Chr06:6999492..6999516 (25 bp)
GGCCCATCGACATGTGGAACGACGT
LOC_Os06g12810
OsAffx.15396.1.S1_x_at--285--7311Chr06:6999469..6999493 (25 bp)
GTGCTCCTCCACAAGATCGCCGAGA
LOC_Os06g12810
Target Sequence 
GCAACTGGTTCTTCCGCGTCAACTACTTCTCCGAGGGCGGTCGCCGCGTCGCTTGCAGCGGCTGCAGCGGCGACGCCGAC
GCCGGCGAGCTCGCCGACTTCGGCGTCGCGCACGCCGTCCGCCGCGTCGTCAGGGCGGCGCTCGAGGCCACCGCCCGGTG
CGGCGACGGCGACTGCAAGCGCGGCCTCGTCGCGTTCGTGCGGACCTACACGCCGAGCCACTTCGAGCACGGCTCGTGGT
TCGACGGCGGCTACTGCAATCGGACGCGGCCACTGGAGGAAGACGAGGCGCCGAGCTGGGACCAGTCCATCGGGTGGGAT
GTGAGGAGAGCCCATATCGAGGAGGTGACGTCGGCGAGGAAGACGACGCCGGCGACGACGACGAGGTTCGAGGTGCTCGA
CGTGACGAAGGCGATGATGCTGCGCGCCGACGGCCACCCGGGGCGGCACTACGACAAGAGGTCGGCCGGCGGCGGCGCCA
ACGACTGCCTGCACTGGTGCATCCCGGGGCCCATCGACATGTGGAACGACGTGCTCCTCCACAAGATCGCCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15396.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis