Browse Element(s) Details


Os.51692.1.S1_at

Description gb:AK063415.1
DB_XREF= gi:32973433
TID=Os.51692.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51692 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-B08, full insert sequence.
FL= gb:AK063415.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1282010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12780Os.24795.1.S1_at11/116+6979037..6985314DegP protease, putative, expressed
LOC_Os06g12790Os.4079.1.S1_a_at11/116+6989940..6993528RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os06g12790Os.4079.2.S1_a_at11/116+6989940..6993528RAC-like GTP binding protein ARAC10, putative, expressed
LOC_Os06g12800OsAffx.27591.1.S1_x_at11/116+6994344..6995672expressed protein
LOC_Os06g12800OsAffx.27591.1.S1_at11/116+6994344..6995672expressed protein
LOC_Os06g12810OsAffx.15396.1.S1_at11/116+6999437..7003405expressed protein
LOC_Os06g12810OsAffx.15396.1.S1_x_at11/116+6999437..7003405expressed protein
LOC_Os06g12820Os.51692.1.S1_at10/116+7004873..7007331expressed protein
LOC_Os06g12830Os.53094.1.S1_at11/116+7018835..7021062expressed protein
LOC_Os06g12840OsAffx.27593.1.S1_x_at11/116+7024604..7026003hypothetical protein
LOC_Os06g12840OsAffx.27593.1.S1_at11/116+7024604..7026003hypothetical protein
LOC_Os06g12840OsAffx.27593.2.S1_x_at2/116+7024604..7026003hypothetical protein
LOC_Os06g12850OsAffx.27593.2.S1_x_at11/116+7030414..7031805hypothetical protein
LOC_Os06g12850OsAffx.27593.1.S1_x_at1/116+7030414..7031805hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51692.1.S1_at--58--5371Chr06:7005224..7005248 (25 bp)
GAAGAACATCGTCAGCGACTGCCTC
LOC_Os06g12820
Os.51692.1.S1_at--135--1331Chr06:7005150..7005174 (25 bp)
AGAGGCTCACCGAGATCTCCACGCT
LOC_Os06g12820
Os.51692.1.S1_at--791--8091Chr06:7005125..7005149 (25 bp)
GGACCAGGATGCTTCCATCTTTGAG
LOC_Os06g12820
Os.51692.1.S1_at--231--3671Chr06:7005107..7005131 (25 bp)
CTTTGAGGCACCTTAACTTTGTCAC
LOC_Os06g12820
Os.51692.1.S1_at--656--10791Chr06:7005089..7005113 (25 bp)
TTGTCACTTACATGTAGGTCCGGAT
LOC_Os06g12820
Os.51692.1.S1_at--859--7791Chr06:7005073..7005097 (25 bp)
GGTCCGGATCATTAATGTATCACTG
LOC_Os06g12820
Os.51692.1.S1_at--876--6891Chr06:7005057..7005081 (25 bp)
GTATCACTGCATACAATCATACGGG
LOC_Os06g12820
Os.51692.1.S1_at--471--5451Chr06:7005032..7005056 (25 bp)
GAACGATGCATGACTGGTGATGCTA
LOC_Os06g12820
Os.51692.1.S1_at--566--7651Chr06:7005004..7005028 (25 bp)
GGGAGGTCTTCCTATCCATTGAGAG
LOC_Os06g12820
Os.51692.1.S1_at--984--8111Chr06:7004980..7005004 (25 bp)
GGACGTGCATATCTCTCAAATGGTT
LOC_Os06g12820
Os.51692.1.S1_at--891--2211Chr06:7004873..7004897 (25 bp)
ACAAGAGACTACCAATCCATCAGTT
NONE
Target Sequence 
GAAGAACATCGTCAGCGACTGCCTCCACTGGTGCATGCCGGGCCCCGTCGACATGTGGAACGAGATGCTGCTCCAGAGGC
TCACCGAGATCTCCACGCTGGACCAGGATGCTTCCATCTTTGAGGCACCTTAACTTTGTCACTTACATGTAGGTCCGGAT
CATTAATGTATCACTGCATACAATCATACGGGGAACGATGCATGACTGGTGATGCTATAGGGGAGGTCTTCCTATCCATT
GAGAGGACGTGCATATCTCTCAAATGGTTATAAATTTTTTGAAAAACAATCTAGATCAATATATGATGTATCACTTTATA
AATATGTAAATTAAAACAAAACGAACAACAAACAAGAGACTACCAATCCATCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51692.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis