Browse Element(s) Details


OsAffx.27593.1.S1_at

Description tigr:9634.m01273
TID=OsAffx.27593.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1284011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12810OsAffx.15396.1.S1_at11/116+6999437..7003405expressed protein
LOC_Os06g12810OsAffx.15396.1.S1_x_at11/116+6999437..7003405expressed protein
LOC_Os06g12820Os.51692.1.S1_at10/116+7004873..7007331expressed protein
LOC_Os06g12830Os.53094.1.S1_at11/116+7018835..7021062expressed protein
LOC_Os06g12840OsAffx.27593.1.S1_x_at11/116+7024604..7026003hypothetical protein
LOC_Os06g12840OsAffx.27593.1.S1_at11/116+7024604..7026003hypothetical protein
LOC_Os06g12840OsAffx.27593.2.S1_x_at2/116+7024604..7026003hypothetical protein
LOC_Os06g12850OsAffx.27593.2.S1_x_at11/116+7030414..7031805hypothetical protein
LOC_Os06g12850OsAffx.27593.1.S1_x_at1/116+7030414..7031805hypothetical protein
LOC_Os06g12860OsAffx.27593.4.S1_at11/116+7036049..7037407hypothetical protein
LOC_Os06g12860OsAffx.27593.2.S1_x_at1/116+7036049..7037407hypothetical protein
LOC_Os06g12860OsAffx.27593.1.S1_x_at1/116+7036049..7037407hypothetical protein
LOC_Os06g12870Os.27436.1.A1_s_at11/116+7042612..7044658expressed protein
LOC_Os06g12870Os.27436.2.S1_s_at11/116+7042612..7044658expressed protein
LOC_Os06g12876Os.24311.1.A1_at9/116+7046261..7051935expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27593.1.S1_at--119--9671Chr06:7025133..7025157 (25 bp)
TCACCGCCGGCCACTGGTTCTGGAA
LOC_Os06g12840
OsAffx.27593.1.S1_at--1136--8131Chr06:7025112..7025136 (25 bp)
GGAACCCGGCCGTGTACCACAGGCG
LOC_Os06g12840
OsAffx.27593.1.S1_at--123--6151Chr06:7025083..7025107 (25 bp)
GAGGTGGTCGGCGTGCACGCGCACC
LOC_Os06g12840
OsAffx.27593.1.S1_at--999--10491Chr06:7025032..7025056 (25 bp)
TTCACCTCGCCGTACCGGGAGGCGT
LOC_Os06g12840
OsAffx.27593.1.S1_at--709--1831Chr06:7025014..7025038 (25 bp)
GAGGCGTTCCGGAGGGCCCTGGAGC
LOC_Os06g12840
OsAffx.27593.1.S1_at--929--5111Chr06:7024934..7024958 (25 bp)
GCACTTCGACGGGAAGCCGATCTTT
LOC_Os06g12840
OsAffx.27593.1.S1_at--1020--7611Chr06:7024924..7024948 (25 bp)
GGGAAGCCGATCTTTGACCCGACGG
LOC_Os06g12840
OsAffx.27593.1.S1_at--962--6371Chr06:7024916..7024940 (25 bp)
GATCTTTGACCCGACGGCGTGCACG
LOC_Os06g12840
OsAffx.27593.1.S1_at--78--8891Chr06:7024836..7024860 (25 bp)
TGAGGAGCATCGTGTTCGAGGAGGC
LOC_Os06g12840
OsAffx.27593.1.S1_at--651--5891Chr06:7024675..7024699 (25 bp)
GAGCGGATGCAGACGGACTGCCTCC
LOC_Os06g12840
OsAffx.27593.1.S1_at--683--7971Chr06:7024671..7024695 (25 bp)
GGATGCAGACGGACTGCCTCCACTC
LOC_Os06g12840
Target Sequence 
TCACCGCCGGCCACTGGTTCTGGAACCCGGCCGTGTACCACAGGCGCGGCGAGGTGGTCGGCGTGCACGCGCACCCGGAG
CTCAACGCGACCGAGATCGGCTTCACCTCGCCGTACCGGGAGGCGTTCCGGAGGGCCCTGGAGCGGCTGGGCTCCGACGG
GCGGCGGCGGACCGTGGTGCTGGGCACGTTCGCGCCGCCGCACTTCGACGGGAAGCCGATCTTTGACCCGACGGCGTGCA
CGAGGACGGAGCCGTACAGGGACGGGGAGAAGGAGGTGGGGAGCATCGAGAGGGAGATGAGGAGCATCGTGTTCGAGGAG
GCGACCGCCGCGGCGGCGGCGGCGGCGACGATGAGGGTGGAGGTGGAGGACGTGACGAGGCTGGCGACGATGCGGCCGGA
CGGGCACCCGGGGGTGTACATGCACCGCGACCCGTTCGCTGGCGGCGGCGCGCGGCCGGAGCGGATGCAGACGGACTGCC
TCCACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27593.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis