Browse Element(s) Details

Os.27436.2.S1_s_at

Description

gb:CB672605
DB_XREF= gi:29676330
DB_XREF=OSJNEe06L13.f
CLONE=OSJNEe06L13
TID=Os.27436.2
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.27436 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177180.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g12870	11/11	expressed protein
LOC_Os06g41590	1/11	integral membrane HRF1 family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g12830	Os.53094.1.S1_at	11/11	6	+	7018835..7021062	expressed protein
LOC_Os06g12840	OsAffx.27593.1.S1_x_at	11/11	6	+	7024604..7026003	hypothetical protein
LOC_Os06g12840	OsAffx.27593.1.S1_at	11/11	6	+	7024604..7026003	hypothetical protein
LOC_Os06g12840	OsAffx.27593.2.S1_x_at	2/11	6	+	7024604..7026003	hypothetical protein
LOC_Os06g12850	OsAffx.27593.2.S1_x_at	11/11	6	+	7030414..7031805	hypothetical protein
LOC_Os06g12850	OsAffx.27593.1.S1_x_at	1/11	6	+	7030414..7031805	hypothetical protein
LOC_Os06g12860	OsAffx.27593.4.S1_at	11/11	6	+	7036049..7037407	hypothetical protein
LOC_Os06g12860	OsAffx.27593.2.S1_x_at	1/11	6	+	7036049..7037407	hypothetical protein
LOC_Os06g12860	OsAffx.27593.1.S1_x_at	1/11	6	+	7036049..7037407	hypothetical protein
LOC_Os06g12870	Os.27436.1.A1_s_at	11/11	6	+	7042612..7044658	expressed protein
LOC_Os06g12870	Os.27436.2.S1_s_at	11/11	6	+	7042612..7044658	expressed protein
LOC_Os06g12876	Os.24311.1.A1_at	9/11	6	+	7046261..7051935	expressed protein
LOC_Os06g12882	Os.49387.1.S1_at	11/11	6	+	7052690..7055205	Zinc finger protein 291, putative, expressed
LOC_Os06g12890	NA	NA	6	+	7058670..7059523	hypothetical protein
LOC_Os06g12900	Os.35344.18.S1_x_at	10/11	6	+	7060888..7064745	transposon protein, putative, Mutator sub-class
LOC_Os06g12900	Os.35344.3.S1_x_at	9/11	6	+	7060888..7064745	transposon protein, putative, Mutator sub-class
LOC_Os06g12900	OsAffx.22940.5.S1_x_at	3/11	6	+	7060888..7064745	transposon protein, putative, Mutator sub-class
LOC_Os06g12910	OsAffx.15399.1.S1_at	11/11	6	+	7066118..7068523	XPA-binding protein 2, putative

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0016021	cellular_component	integral to membrane

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27436.2.S1_s_at--26--121	2	Chr06:7044473..7044497 (25 bp)	AGTTCTTCCTGCTCCCCAAGAGGCA	LOC_Os06g12870
Os.27436.2.S1_s_at--576--279	1	Chr06:7044456..7044480 (25 bp)	AAGAGGCAGCTTGTGACCTACGCCC	LOC_Os06g12870
Os.27436.2.S1_s_at--1093--459	1	Chr06:7044342..7044366 (25 bp)	GCGACAGACGATGCTTCGGTCATCG	LOC_Os06g12870
Os.27436.2.S1_s_at--610--63	1	Chr06:7044332..7044356 (25 bp)	ATGCTTCGGTCATCGCCTCGTCTCA	LOC_Os06g12870
Os.27436.2.S1_s_at--149--401	1	Chr06:7044314..7044338 (25 bp)	CGTCTCATCACGAGCATGTCAAGGT	LOC_Os06g12870
Os.27436.2.S1_s_at--1007--75	1	Chr06:7044299..7044323 (25 bp)	ATGTCAAGGTGAATGCCAAGCAGCT	LOC_Os06g12870
Os.27436.2.S1_s_at--451--735	1	Chr06:7044291..7044315 (25 bp)	GTGAATGCCAAGCAGCTGCCTGTGC	LOC_Os06g12870
Os.27436.2.S1_s_at--496--1051	1	Chr06:7044262..7044286 (25 bp)	TTCTGACCAAGGAGATGAAGGGTTC	LOC_Os06g12870
Os.27436.2.S1_s_at--1031--675	1	Chr06:7044246..7044265 (20 bp)	GTTCAAGAAGAATGCGATAGCCGGA	LOC_Os06g12870
Os.27436.2.S1_s_at--1053--465	1	Chr06:7043946..7043970 (25 bp)	GCGTGCGACTACTCCGACGGCGAGT	LOC_Os06g12870
Os.27436.2.S1_s_at--289--841	1	Chr06:7043906..7043930 (25 bp)	GGCCGCCTCTCTACAACGGGACGAG	LOC_Os06g12870

Target Sequence

AGTTCTTCCTGCTCCCCAAGAGGCAGCTTGTGACCTACGCCCTCTACGCTCTCATCCCTCTCGCCCTCCTCCATTACCTT
CTCTTCAACCCTGTGGCCACTGCCAAGAAGCCGGTGGTGGTGGTGGTTCANGCGACAGACGATGCTTCGGTCATCGCCTC
GTCTCATCACGAGCATGTCAAGGTGAATGCCAAGCAGCTGCCTGTGCCCCCTTCTGACCAAGGAGATGAAGGGTTCAAGA
AGAATGCGATAGCCGGANAAGTGGCGGCGGCGGCGGCGTGCGACTACTCCGACGGCGAGTGGGTGCCGGACGCGCGGCCG
CCTCTCTACAACGGGACGAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis