Browse Element(s) Details


OsAffx.27593.4.S1_at

Description tigr:9634.m01275
TID=OsAffx.27593.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1286011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12830Os.53094.1.S1_at11/116+7018835..7021062expressed protein
LOC_Os06g12840OsAffx.27593.1.S1_x_at11/116+7024604..7026003hypothetical protein
LOC_Os06g12840OsAffx.27593.1.S1_at11/116+7024604..7026003hypothetical protein
LOC_Os06g12840OsAffx.27593.2.S1_x_at2/116+7024604..7026003hypothetical protein
LOC_Os06g12850OsAffx.27593.2.S1_x_at11/116+7030414..7031805hypothetical protein
LOC_Os06g12850OsAffx.27593.1.S1_x_at1/116+7030414..7031805hypothetical protein
LOC_Os06g12860OsAffx.27593.4.S1_at11/116+7036049..7037407hypothetical protein
LOC_Os06g12860OsAffx.27593.2.S1_x_at1/116+7036049..7037407hypothetical protein
LOC_Os06g12860OsAffx.27593.1.S1_x_at1/116+7036049..7037407hypothetical protein
LOC_Os06g12870Os.27436.1.A1_s_at11/116+7042612..7044658expressed protein
LOC_Os06g12870Os.27436.2.S1_s_at11/116+7042612..7044658expressed protein
LOC_Os06g12876Os.24311.1.A1_at9/116+7046261..7051935expressed protein
LOC_Os06g12882Os.49387.1.S1_at11/116+7052690..7055205Zinc finger protein 291, putative, expressed
LOC_Os06g12890NANA6+7058670..7059523hypothetical protein
LOC_Os06g12900Os.35344.18.S1_x_at10/116+7060888..7064745transposon protein, putative, Mutator sub-class
LOC_Os06g12900Os.35344.3.S1_x_at9/116+7060888..7064745transposon protein, putative, Mutator sub-class
LOC_Os06g12900OsAffx.22940.5.S1_x_at3/116+7060888..7064745transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27593.4.S1_at--1141--9451Chr06:7036596..7036620 (25 bp)
TCTGGATCCCGACCGTCTACCACGA
LOC_Os06g12860
OsAffx.27593.4.S1_at--292--3351Chr06:7036565..7036589 (25 bp)
CACGGGCGAGGTGGTTGGCATGCAC
LOC_Os06g12860
OsAffx.27593.4.S1_at--1102--6131Chr06:7036558..7036582 (25 bp)
GAGGTGGTTGGCATGCACAACGTCA
LOC_Os06g12860
OsAffx.27593.4.S1_at--139--1051Chr06:7036557..7036581 (25 bp)
AGGTGGTTGGCATGCACAACGTCAC
LOC_Os06g12860
OsAffx.27593.4.S1_at--770--651Chr06:7036546..7036570 (25 bp)
ATGCACAACGTCACCGGGCTCAAGA
LOC_Os06g12860
OsAffx.27593.4.S1_at--807--9011Chr06:7036545..7036569 (25 bp)
TGCACAACGTCACCGGGCTCAAGAA
LOC_Os06g12860
OsAffx.27593.4.S1_at--32--1891Chr06:7036539..7036563 (25 bp)
ACGTCACCGGGCTCAAGAACACCGG
LOC_Os06g12860
OsAffx.27593.4.S1_at--1069--4151Chr06:7036497..7036521 (25 bp)
CGCCGTACAGGAGGACTCTGCGGAT
LOC_Os06g12860
OsAffx.27593.4.S1_at--178--2131Chr06:7036491..7036515 (25 bp)
ACAGGAGGACTCTGCGGATGGCGCT
LOC_Os06g12860
OsAffx.27593.4.S1_at--1156--4691Chr06:7036134..7036158 (25 bp)
GCGGCGTGCCGAAGCGGCTGCAGGT
LOC_Os06g12860
OsAffx.27593.4.S1_at--732--4751Chr06:7036118..7036142 (25 bp)
GCTGCAGGTGGACTGCCTCCACTTC
LOC_Os06g12860
Target Sequence 
TCTGGATCCCGACCGTCTACCACGACGCCGCCACGGGCGAGGTGGTTGGCATGCACAACGTCACCGGGCTCAAGAACACC
GGCGACATCGGCCTCTTCGCGCCGTACAGGAGGACTCTGCGGATGGCGCTGGAGCGGCTCGTCAGCTCCGGCGCCGGCAA
CCGCACCCGCGCCCGCACCGTGGTGGTGGCCACGTTCTCGCCGTCGCACTTCGAGAAGGCGTGGGACGACCCCACGACGT
GCGCGAGGACGCGGCCGTACGACGACGGGGAGAAGGAGGTGGACGCCGACGAGAGGGAGCTCCGGAGCATCGCCATGGAG
GAGGTGGCCGCCGCCGCCGCTCGCCGTGGCGCCGCCGCTGGCGGCGGCGAGAGCAGGGTGGAGGTGCTCGACGTGACGAA
GCTGGCGACGATGCGGCCGGACGGGCACCCGGGGGTGTACATGCACCGCGACCCGTTCGCGCGCGGCGTGCCGAAGCGGC
TGCAGGTGGACTGCCTCCACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27593.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis