Browse Element(s) Details

Os.49387.1.S1_at

Description

gb:AK060231.1
DB_XREF= gi:32970249
TID=Os.49387.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49387 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-003-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-003-A03, full insert sequence.
FL= gb:AK060231.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g12882	11/11	Zinc finger protein 291, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g12850	OsAffx.27593.2.S1_x_at	11/11	6	+	7030414..7031805	hypothetical protein
LOC_Os06g12850	OsAffx.27593.1.S1_x_at	1/11	6	+	7030414..7031805	hypothetical protein
LOC_Os06g12860	OsAffx.27593.4.S1_at	11/11	6	+	7036049..7037407	hypothetical protein
LOC_Os06g12860	OsAffx.27593.2.S1_x_at	1/11	6	+	7036049..7037407	hypothetical protein
LOC_Os06g12860	OsAffx.27593.1.S1_x_at	1/11	6	+	7036049..7037407	hypothetical protein
LOC_Os06g12870	Os.27436.1.A1_s_at	11/11	6	+	7042612..7044658	expressed protein
LOC_Os06g12870	Os.27436.2.S1_s_at	11/11	6	+	7042612..7044658	expressed protein
LOC_Os06g12876	Os.24311.1.A1_at	9/11	6	+	7046261..7051935	expressed protein
LOC_Os06g12882	Os.49387.1.S1_at	11/11	6	+	7052690..7055205	Zinc finger protein 291, putative, expressed
LOC_Os06g12890	NA	NA	6	+	7058670..7059523	hypothetical protein
LOC_Os06g12900	Os.35344.18.S1_x_at	10/11	6	+	7060888..7064745	transposon protein, putative, Mutator sub-class
LOC_Os06g12900	Os.35344.3.S1_x_at	9/11	6	+	7060888..7064745	transposon protein, putative, Mutator sub-class
LOC_Os06g12900	OsAffx.22940.5.S1_x_at	3/11	6	+	7060888..7064745	transposon protein, putative, Mutator sub-class
LOC_Os06g12910	OsAffx.15399.1.S1_at	11/11	6	+	7066118..7068523	XPA-binding protein 2, putative
LOC_Os06g12920	NA	NA	6	+	7071754..7072192	hypothetical protein
LOC_Os06g12930	NA	NA	6	+	7075783..7077025	hypothetical protein
LOC_Os06g12940	OsAffx.27615.1.S1_at	11/11	6	+	7078678..7081436	hypothetical protein
LOC_Os06g12940	OsAffx.11516.1.S1_x_at	1/11	6	+	7078678..7081436	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49387.1.S1_at--478--343	1	Chr06:7054618..7054642 (25 bp)	CAGATTCCATTCTTTTGGATGGTTG	LOC_Os06g12882
Os.49387.1.S1_at--587--555	1	Chr06:7054690..7054714 (25 bp)	GAAACCCGCAAGGTGATATCTCAAT	LOC_Os06g12882
Os.49387.1.S1_at--970--649	1	Chr06:7054704..7054728 (25 bp)	GATATCTCAATAAGGTCGAACCGCA	LOC_Os06g12882
Os.49387.1.S1_at--1017--259	1	Chr06:7054722..7054746 (25 bp)	AACCGCAAAAGTGCACGGCCAGTTT	LOC_Os06g12882
Os.49387.1.S1_at--177--723	1	Chr06:7054732..7054756 (25 bp)	GTGCACGGCCAGTTTTAGGAAAAGG	LOC_Os06g12882
Os.49387.1.S1_at--881--805	1	Chr06:7054851..7054875 (25 bp)	GGAGAAACTTCATCTAACTTCATGT	LOC_Os06g12882
Os.49387.1.S1_at--581--349	1	Chr06:7054871..7054895 (25 bp)	CATGTTGCATAGAAAAATCCCAGCT	LOC_Os06g12882
Os.49387.1.S1_at--677--239	1	Chr06:7055052..7055076 (25 bp)	AAACTTCAGCTGGACGGATGGTGAT	LOC_Os06g12882
Os.49387.1.S1_at--1143--815	1	Chr06:7055103..7055127 (25 bp)	GGAAAAGACATTTGCCATTTTTACA	LOC_Os06g12882
Os.49387.1.S1_at--682--983	1	Chr06:7055124..7055148 (25 bp)	TACAAGGCTTGCTCGAGGTAACTCG	LOC_Os06g12882
Os.49387.1.S1_at--1159--1071	1	Chr06:7055132..7055156 (25 bp)	TTGCTCGAGGTAACTCGGCCAAATT	LOC_Os06g12882

Target Sequence

CAGATTCCATTCTTTTGGATGGTTGGNGAACCAACAGTTCCAGTGATAATACACAGATNTTATTGGATACAAGAAACCCG
CAAGGTGATATCTCAATAAGGTCGAACCGCAAAAGTGCACGGCCAGTTTTAGGAAAAGGAGTTTCAGGGGTCATCAGATT
GAGCAGAAATAAGGGCCAAAGAGACGGCCGAGGAGCAAGAATTGGTGATGATGGNCCTCTGAAGCAAAGAGCTGGAGAAA
CTTCATCTAACTTCATGTTGCATAGAAAAATCCCAGCTTCTTTNTTGGACAAGGCTGAAGAGTTNTTCTGTAGTGAAAAT
GATACAGCAGNGAATATAACAAACTGACCAGACCNCAGAACAAGCTACTTAATTTGGNCCTTTTTTATTTCCTTTTGAGA
TGATGGTTCTTGAGAATATACAACTAGACAGGNTAAACTTCAGCTGGACGGATGGTGATGATTAGGGATTGACTGTATAG
GTTTTGGAAAAGACATTTGCCATTTTTACAAGGCTTGCTCGAGGTAACTCGGCCAAATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis